Last updated on 2024-08-07 00:49:11 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 7.75 | 49.71 | 57.46 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 4.69 | 139.88 | 144.57 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 336.05 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 286.48 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.1 | 9.00 | 240.00 | 249.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 7.35 | 48.30 | 55.65 | ERROR | |
| r-release-linux-x86_64 | 1.0.1 | 6.42 | 178.95 | 185.37 | OK | |
| r-release-macos-arm64 | 1.0.1 | 132.00 | OK | |||
| r-release-macos-x86_64 | 1.0.1 | 264.00 | OK | |||
| r-release-windows-x86_64 | 1.0.1 | 9.00 | 243.00 | 252.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 136.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 235.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 10.00 | 257.00 | 267.00 | OK |
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(APCalign)
>
> test_check("APCalign")
Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"
Caused by error:
! Invalid: Parquet magic bytes not found in footer. Either the file is corrupted or this is not a parquet file.
Backtrace:
▆
1. ├─testthat::test_check("APCalign")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3
15. │ └─APCalign:::dataset_access_function(...)
16. │ └─APCalign:::dataset_get(version, path)
17. │ └─arrow::read_parquet(path_to_apni)
18. │ └─ParquetFileReader$create(file, props = props, mmap = mmap, ...)
19. │ └─arrow:::parquet___arrow___FileReader__OpenFile(file, props, reader_props)
20. └─base::.handleSimpleError(...)
21. └─testthat (local) h(simpleError(msg, call))
22. └─rlang::abort(...)
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.1
Check: data for non-ASCII characters
Result: NOTE
Note: found 4 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [2s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(APCalign)
>
> test_check("APCalign")
Error in `FUN()`:
! In path: "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/APCalign.Rcheck/tests/testthat/helper.R"
Caused by error:
! Invalid: Parquet magic bytes not found in footer. Either the file is corrupted or this is not a parquet file.
Backtrace:
▆
1. ├─testthat::test_check("APCalign")
2. │ └─testthat::test_dir(...)
3. │ └─testthat:::test_files(...)
4. │ └─testthat:::test_files_serial(...)
5. │ └─testthat:::test_files_setup_state(...)
6. │ └─testthat::source_test_helpers(".", env)
7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE)
8. │ └─base::lapply(...)
9. │ └─testthat (local) FUN(X[[i]], ...)
10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap)
11. │ ├─base::withCallingHandlers(...)
12. │ └─base::eval(exprs, env)
13. │ └─base::eval(exprs, env)
14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3
15. │ └─APCalign:::dataset_access_function(...)
16. │ └─APCalign:::dataset_get(version, path)
17. │ └─arrow::read_parquet(path_to_apni)
18. │ └─ParquetFileReader$create(file, props = props, mmap = mmap, ...)
19. │ └─arrow:::parquet___arrow___FileReader__OpenFile(file, props, reader_props)
20. └─base::.handleSimpleError(...)
21. └─testthat (local) h(simpleError(msg, call))
22. └─rlang::abort(...)
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘updating-taxon-names.Rmd’
...
+ bootstrap_options = c(" ..." ... [TRUNCATED]
> my_kable_styling <- util_kable_styling_html
> match_taxa_documentation <- readr::read_csv(here("inst",
+ "extdata", "match_taxa_documentation.csv"), show_col_types = FALSE)
When sourcing ‘updating-taxon-names.R’:
Error: '/private/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T/RtmpGFCAfS/file50a9933677/vignettes/inst/extdata/match_taxa_documentation.csv' does not exist.
Execution halted
‘APCalign.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘updating-taxon-names.Rmd’ using ‘UTF-8’... failed
Flavor: r-oldrel-macos-arm64
Version: 1.0.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘updating-taxon-names.Rmd’
...
+ bootstrap_options = c(" ..." ... [TRUNCATED]
> my_kable_styling <- util_kable_styling_html
> match_taxa_documentation <- readr::read_csv(here("inst",
+ "extdata", "match_taxa_documentation.csv"), show_col_types = FALSE)
When sourcing ‘updating-taxon-names.R’:
Error: '/private/var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T/RtmpfMv4Br/filecd8e41e4a3f3/vignettes/inst/extdata/match_taxa_documentation.csv' does not exist.
Execution halted
‘APCalign.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘updating-taxon-names.Rmd’ using ‘UTF-8’... failed
Flavor: r-oldrel-macos-x86_64