Estimating Abundance of Clones from DNA Fragmentation Data

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Documentation for package ‘sonicLength’ version 1.4.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

sonicLength-package	Calibration of Number of Length Variants
A1	HTLV-1 Fragment Length Data
dfrag	Simple Fragment Length Distribution
estAbund	estimate Abundances from sonicated samples
Ey.given.x	E-Step for Abundance Estimation
maxEM	maximum likelihood estimates relative abundances
maxEM.iter.control	iteration controls
mstep	M-step to maximize theta
pfrag	Simple Fragment Length Distribution
phi.update.lframe	estimate phi
pr.y.given.x	E-Step for Abundance Estimation
qfrag	Simple Fragment Length Distribution
rfrag	Simple Fragment Length Distribution
simSonic	Simulate Sonicated Data
sonicLength	Calibration of Number of Length Variants