Ranking of Nodes with Kernelized Score Functions

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Documentation for package ‘RANKS’ version 1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

RANKS-package	RANKS: Ranking of Nodes with Kernelized Score Functions
cauchy.kernel	Kernel functions
compute.acc	Utility functions
compute.F	Utility functions
do.cv.data	Utility functions
do.GBA	GBA cross-validation experiments with multiple classes
do.loo.RANKS	RANKS leave-one-out experiments with multiple classes
do.RANKS	RANKS cross-validation experiments with multiple classes
do.RW	Random walk cross-validation experiments with multiple classes
do.RWR	Random walk with restart cross-validation experiments with multiple classes
do.stratified.cv.data	Utility functions
eav.score	Multiple vertex score functions
eav.score-method	Multiple vertex score functions
eav.score-methods	Multiple vertex score functions
eav.w.score	Multiple vertex score functions - weighted version
eav.w.score-method	Multiple vertex score functions - weighted version
eav.w.score-methods	Multiple vertex score functions - weighted version
find.optimal.thresh.cv	Function to find the optimal RANKS score thereshold
gaussian.kernel	Kernel functions
GBAmax	Guilt By Association (GBA) using the maximum rule
GBAsum	Guilt By Association (GBA) using the sum rule
identity.kernel	Kernel functions
inv.multiquadric.kernel	Kernel functions
ker.score.classifier.cv	Multiple cross-validation with RANKS for classification
ker.score.classifier.holdout	RANKS held-out procedure for a single class
ker.score.cv	RANKS cross-validation for a single class
ker.score.holdout	RANKS held-out procedure for a single class
Kernel functions	Kernel functions
KNN.score	Multiple vertex score functions
KNN.score-method	Multiple vertex score functions
KNN.score-methods	Multiple vertex score functions
KNN.w.score	Multiple vertex score functions - weighted version
KNN.w.score-method	Multiple vertex score functions - weighted version
KNN.w.score-methods	Multiple vertex score functions - weighted version
label.prop	Label propagation
labelsfromscores	Utility functions
laplacian.kernel	Kernel functions
linear.kernel	Kernel functions
Methods for scoring a single vertex	Single vertex score functions
Methods for scoring a single vertex - weighted version	Single vertex score functions - weighted version
Methods for scoring multiple vertices	Multiple vertex score functions
Methods for scoring multiple vertices - weighted version	Multiple vertex score functions - weighted version
multiple.ker.score.cv	RANKS multiple cross-validation for a single class
multiple.ker.score.thresh.cv	Function for RANKS multiple cross-validation and optimal threshold finding for a single class
Multiple.labels.from.scores	Utility functions
multiple.RW.cv	Random walk, GBA and labelprop multiple cross-validation for a single class
NN.score	Multiple vertex score functions
NN.score-method	Multiple vertex score functions
NN.score-methods	Multiple vertex score functions
NN.w.score	Multiple vertex score functions - weighted version
NN.w.score-method	Multiple vertex score functions - weighted version
NN.w.score-methods	Multiple vertex score functions - weighted version
norm1	Utility functions
p.step.rw.kernel	Random walk kernel
p.step.rw.kernel-method	Random walk kernel
p.step.rw.kernel-methods	Random walk kernel
poly.kernel	Kernel functions
RANKS	RANKS: Ranking of Nodes with Kernelized Score Functions
RW	Random walk on a graph
RW.cv	Random walk, GBA and labelprop cross-validation for a single class
rw.kernel	Random walk kernel
rw.kernel-method	Random walk kernel
rw.kernel-methods	Random walk kernel
RWR	Random walk with Restart on a graph
selection.test	Utility functions
single.eav.score	Single vertex score functions
single.eav.score-method	Single vertex score functions
single.eav.score-methods	Single vertex score functions
single.eav.w.score	Single vertex score functions - weighted version
single.eav.w.score-method	Single vertex score functions - weighted version
single.eav.w.score-methods	Single vertex score functions - weighted version
single.KNN.score	Single vertex score functions
single.KNN.score-method	Single vertex score functions
single.KNN.score-methods	Single vertex score functions
single.KNN.w.score	Single vertex score functions - weighted version
single.KNN.w.score-method	Single vertex score functions - weighted version
single.KNN.w.score-methods	Single vertex score functions - weighted version
single.NN.score	Single vertex score functions
single.NN.score-method	Single vertex score functions
single.NN.score-methods	Single vertex score functions
single.NN.w.score	Single vertex score functions - weighted version
single.NN.w.score-method	Single vertex score functions - weighted version
single.NN.w.score-methods	Single vertex score functions - weighted version
single.WSLD.score	Single vertex score functions
single.WSLD.score-method	Single vertex score functions
single.WSLD.score-methods	Single vertex score functions
Unit.sphere.norm	Utility functions
WSLD.score	Multiple vertex score functions
WSLD.score-method	Multiple vertex score functions
WSLD.score-methods	Multiple vertex score functions