Compute and Illustrate the Multiple Facets of Functional Diversity

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Documentation for package ‘mFD’ version 1.0.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

alpha.fd.fe	Compute the set of indices based on number of species in Functional Entities
alpha.fd.fe.plot	Illustrate Functional Diversity indices based on Functional Entities
alpha.fd.hill	Compute Functional alpha-Diversity indices based on Hill Numbers
alpha.fd.multidim	Compute a set of alpha functional indices for a set of assemblages
alpha.multidim.plot	Plot functional space and chosen functional indices
asb.sp.summary	Summarize Assemblage x Species data frame
background.plot	Plot background of multidimensional plots
baskets_fruits_weights	Dataset: Baskets Composition in Fruits Species
beta.fd.hill	Compute Functional beta-Diversity indices based on Hill Numbers
beta.fd.multidim	Compute Functional beta-Diversity indices for pairs of assemblages in a multidimensional space
beta.multidim.plot	Illustrate Functional beta-Diversity indices for pairs of assemblages in a multidimensional space
dist.nearneighb	Compute distance of a given point to its nearest neighbor in the functional space and the identity of the nearest neighbor
dist.point	Compute distances of all points to a given point in the functional space
dist.to.df	Merge distance object(s) into a single data frame
fdis.plot	Plot FDis index
fdiv.plot	Plot FDiv indice
feve.plot	Plot FEve index
fide.plot	Plot FIde index
fnnd.plot	Plot FNND index
fori.plot	Plot FOri
fric.plot	Plot FRic index
fruits_traits	Dataset: Traits Values of Fruits Species
fruits_traits_cat	Dataset: Fruits Traits Informations
fspe.plot	Plot FSpe
funct.dist	Compute functional distance between species
funct.space.plot	Plot species position in a functional space
fuse	Compute FUSE (Functionally Unique, Specialized and Endangered)
mst.computation	Compute the Minimum Spanning Tree (MST) linking species of a given assemblage
panels.to.patchwork	Plot individual plots along a pair of functional axes into a unique graph
pool.plot	Plot species from the pool
quality.fspaces	Compute functional spaces and their quality
quality.fspaces.plot	Plot functional space quality with a chosen quality metric
sp.filter	Retrieve information about species in a given assemblage
sp.to.fe	Compute Functional Entities composition based on a Species x Traits matrix
sp.tr.summary	Summarize Species x Traits data frame
tr.cont.fspace	Build a functional space based on continuous traits only
tr.cont.scale	Scale continuous traits
traits.faxes.cor	Correlation between Traits and Axes
vertices	Compute vertices of the Minimal Convex Hull shaping species from a single assemblage in a multidimensional functional space