Scrubbing and Other Data Cleaning Routines for fMRI


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Documentation for package ‘fMRIscrub’ version 0.8.6

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artifact_images Artifact images
CompCor Anatomical CompCor
CompCor_HCP Anatomical CompCor for HCP NIFTI and CIFTI data
Dat1 First Example Time Series from the ABIDE
Dat2 Second Example Time Series from the ABIDE
dct2Hz Convert between number of DCT bases and Hz of highpass filter
dct_bases Cosine bases for the DCT
dct_convert Convert between number of DCT bases and Hz of highpass filter
DVARS DVARS
erode_vol Erode volumetric mask
FD Framewise Displacement
fMRIscrub fMRIscrub: fMRI scrubbing and other data cleaning routines
fsl_bptf 'bptf' function from FSL
fusedPCA Fused PCA (C++ core)
high_kurtosis Which components have high kurtosis?
Hz2dct Convert between number of DCT bases and Hz of highpass filter
leverage Leverage
nuisance_regression Nuisance regression
pct_sig Convert data values to percent signal.
plot.scrub_DVARS Plot a '"scrub_DVARS"' object
plot.scrub_FD Plot a '"scrub_FD"' object
plot.scrub_projection Plot a '"scrub_projection"' object
print.scrub_DVARS Summarize a '"scrub_DVARS"' object
print.scrub_FD Summarize a '"scrub_FD"' object
print.scrub_projection Summarize a '"scrub_projection"' object
print.summary.scrub_DVARS Summarize a '"scrub_DVARS"' object
print.summary.scrub_FD Summarize a '"scrub_FD"' object
print.summary.scrub_projection Summarize a '"scrub_projection"' object
pscrub Projection scrubbing
rob_scale Stabilize the center and scale of a timeseries robustly
scale_med Scale data columns robustly
scrub Data-driven scrubbing
scrub_xifti Scrub fMRI data in CIFTI format
summary.scrub_DVARS Summarize a '"scrub_DVARS"' object
summary.scrub_FD Summarize a '"scrub_FD"' object
summary.scrub_projection Summarize a '"scrub_projection"' object
unmask_vol Undo a volumetric mask