A B C D E F G I L M N P R S T V misc
as.bru_options | Create or update an options objects |
bincount | 1D LGCP bin count simulation and comparison with data |
bru | Convenient model fitting using (iterated) INLA |
bru_call_options | Additional bru options |
bru_component | Latent model component construction |
bru_component_list | Methods for inlabru component lists |
bru_compute_linearisation | Compute inlabru model linearisation information |
bru_compute_linearisation.bru_like | Compute inlabru model linearisation information |
bru_compute_linearisation.bru_like_list | Compute inlabru model linearisation information |
bru_compute_linearisation.bru_model | Compute inlabru model linearisation information |
bru_compute_linearisation.component | Compute inlabru model linearisation information |
bru_fill_missing | Fill in missing values in Spatial grids |
bru_forward_transformation | Transformation tools |
bru_info | Methods for bru_info objects |
bru_info.bru | Methods for bru_info objects |
bru_info.character | Methods for bru_info objects |
bru_inverse_transformation | Transformation tools |
bru_log | inlabru log message methods |
bru_log_active | inlabru log message methods |
bru_log_get | inlabru log message methods |
bru_log_message | inlabru log message methods |
bru_log_reset | inlabru log message methods |
bru_make_stack | Build an inla data stack from linearisation information |
bru_make_stack.bru_like | Build an inla data stack from linearisation information |
bru_make_stack.bru_like_list | Build an inla data stack from linearisation information |
bru_mapper | Methods for 'bru_mapper' objects |
bru_mapper.default | Methods for 'bru_mapper' objects |
bru_mapper.inla.mesh | Methods for 'bru_mapper' objects |
bru_mapper.inla.mesh.1d | Methods for 'bru_mapper' objects |
bru_mapper_collect | Methods for 'bru_mapper' objects |
bru_mapper_factor | Methods for 'bru_mapper' objects |
bru_mapper_index | Methods for 'bru_mapper' objects |
bru_mapper_linear | Methods for 'bru_mapper' objects |
bru_mapper_matrix | Methods for 'bru_mapper' objects |
bru_mapper_methods | Implementation methods for mapper objects |
bru_mapper_multi | Methods for 'bru_mapper' objects |
bru_mapper_offset | Methods for 'bru_mapper' objects |
bru_options | Create or update an options objects |
bru_options_check | Create or update an options objects |
bru_options_default | Create or update an options objects |
bru_options_get | Create or update an options objects |
bru_options_reset | Create or update an options objects |
bru_options_set | Create or update an options objects |
bru_rerun | Convenient model fitting using (iterated) INLA |
bru_safe_inla | Load INLA safely for examples and tests |
bru_standardise_names | Standardise inla hyperparameter names |
c.component_list | Methods for inlabru component lists |
component | Latent model component construction |
component.character | Latent model component construction |
component_eval | Evaluate component values in predictor expressions |
component_list | Methods for inlabru component lists |
component_list.formula | Methods for inlabru component lists |
component_list.list | Methods for inlabru component lists |
countdata1 | 1-Dimensional Homogeneous Poisson example. |
countdata2 | 1-Dimensional NonHomogeneous Poisson example. |
countdata3a | 1-Dimensional NonHomogeneous Poisson example. |
countdata3b | 1-Dimensional NonHomogeneous Poisson example. |
cov2_1D | 1-Dimensional NonHomogeneous Poisson example. |
cprod | Cross product of integration points |
deltaIC | Summarise DIC and WAIC from 'lgcp' objects. |
devel.cvmeasure | Variance and correlations measures for prediction components |
evaluate_A | Compute all A-matrices |
evaluate_index | Compute all index values |
expand_labels | Expand labels |
E_nc1 | 1-Dimensional Homogeneous Poisson example. |
E_nc2 | 1-Dimensional NonHomogeneous Poisson example. |
E_nc3a | 1-Dimensional NonHomogeneous Poisson example. |
E_nc3b | 1-Dimensional NonHomogeneous Poisson example. |
fm_CRS | Create a coordinate reference system object |
fm_crs_get_ellipsoid_radius | Handling CRS/WKT |
fm_crs_get_lengthunit | Handling CRS/WKT |
fm_crs_get_wkt | Handling CRS/WKT |
fm_crs_is_geocent | Handling CRS/WKT |
fm_crs_set_ellipsoid_radius | Handling CRS/WKT |
fm_crs_set_lengthunit | Handling CRS/WKT |
fm_crs_wkt | Handling CRS/WKT |
fm_fallback_PROJ6 | PROJ6 detection |
fm_has_PROJ6 | PROJ6 detection |
fm_not_for_PROJ4 | PROJ6 detection |
fm_not_for_PROJ6 | PROJ6 detection |
fm_requires_PROJ6 | PROJ6 detection |
fm_spTransform | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_spTransform.default | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_spTransform.inla.mesh | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_spTransform.inla.mesh.lattice | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_spTransform.inla.mesh.segment | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_spTransform.SpatialPoints | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_spTransform.SpatialPointsDataFrame | Handle transformation of various inla objects according to coordinate reference systems of sp::CRS or INLA::inla.CRS class. |
fm_sp_get_crs | Extract CRS information |
fm_wkt_as_wkt_tree | Internal WKT handling |
fm_wkt_get_ellipsoid_radius | Handling CRS/WKT |
fm_wkt_get_lengthunit | Handling CRS/WKT |
fm_wkt_is_geocent | Handling CRS/WKT |
fm_wkt_predef | Create a coordinate reference system object |
fm_wkt_set_ellipsoid_radius | Handling CRS/WKT |
fm_wkt_set_lengthunit | Handling CRS/WKT |
fm_wkt_tree_as_wkt | Internal WKT handling |
fm_wkt_tree_get_item | Internal WKT handling |
fm_wkt_tree_set_item | Internal WKT handling |
fm_wkt_unit_params | Handling CRS/WKT |
generate | Generate samples from fitted bru models |
generate.bru | Generate samples from fitted bru models |
gg | ggplot2 geomes for inlabru related objects |
gg.data.frame | Geom for data.frame |
gg.inla.mesh | Geom for inla.mesh objects |
gg.inla.mesh.1d | Geom for inla.mesh.1d objects |
gg.matrix | Geom for matrix |
gg.prediction | Geom for predictions |
gg.RasterLayer | Geom for RasterLayer objects |
gg.SpatialGridDataFrame | Geom for SpatialGridDataFrame objects |
gg.SpatialLines | Geom for SpatialLines objects |
gg.SpatialPixels | Geom for SpatialPixels objects |
gg.SpatialPixelsDataFrame | Geom for SpatialPixelsDataFrame objects |
gg.SpatialPoints | Geom for SpatialPoints objects |
gg.SpatialPolygons | Geom for SpatialPolygons objects |
globe | Plot a globe using rgl |
glplot | Render Spatial* and inla.mesh objects using RGL |
glplot.inla.mesh | Visualize SpatialPoints using RGL |
glplot.SpatialLines | Visualize SpatialLines using RGL |
glplot.SpatialPoints | Visualize SpatialPoints using RGL |
gm | ggplot geom for spatial data |
gmap | Plot a map using extend of a spatial object |
gorillas | Gorilla nesting sites |
ibm_amatrix | Methods for 'bru_mapper' objects |
ibm_amatrix.bru_mapper_collect | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_factor | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_index | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_inla_mesh_1d | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_inla_mesh_2d | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_linear | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_matrix | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_multi | Implementation methods for mapper objects |
ibm_amatrix.bru_mapper_offset | Implementation methods for mapper objects |
ibm_amatrix.default | Implementation methods for mapper objects |
ibm_inla_subset | Methods for 'bru_mapper' objects |
ibm_inla_subset.default | Methods for 'bru_mapper' objects |
ibm_n | Methods for 'bru_mapper' objects |
ibm_n.bru_mapper_collect | Implementation methods for mapper objects |
ibm_n.bru_mapper_factor | Implementation methods for mapper objects |
ibm_n.bru_mapper_inla_mesh_1d | Implementation methods for mapper objects |
ibm_n.bru_mapper_inla_mesh_2d | Implementation methods for mapper objects |
ibm_n.bru_mapper_linear | Implementation methods for mapper objects |
ibm_n.bru_mapper_matrix | Implementation methods for mapper objects |
ibm_n.bru_mapper_multi | Implementation methods for mapper objects |
ibm_n.bru_mapper_offset | Implementation methods for mapper objects |
ibm_n.default | Implementation methods for mapper objects |
ibm_valid_input | Methods for 'bru_mapper' objects |
ibm_valid_input.bru_mapper_collect | Implementation methods for mapper objects |
ibm_valid_input.bru_mapper_index | Implementation methods for mapper objects |
ibm_valid_input.bru_mapper_multi | Implementation methods for mapper objects |
ibm_valid_input.default | Implementation methods for mapper objects |
ibm_values | Methods for 'bru_mapper' objects |
ibm_values.bru_mapper_collect | Implementation methods for mapper objects |
ibm_values.bru_mapper_factor | Implementation methods for mapper objects |
ibm_values.bru_mapper_inla_mesh_1d | Implementation methods for mapper objects |
ibm_values.bru_mapper_inla_mesh_2d | Implementation methods for mapper objects |
ibm_values.bru_mapper_linear | Implementation methods for mapper objects |
ibm_values.bru_mapper_matrix | Implementation methods for mapper objects |
ibm_values.bru_mapper_multi | Implementation methods for mapper objects |
ibm_values.bru_mapper_offset | Implementation methods for mapper objects |
ibm_values.default | Implementation methods for mapper objects |
iinla.getOption | Deprecated functions in inlabru |
iinla.setOption | Deprecated functions in inlabru |
init.tutorial | Deprecated functions in inlabru |
inla.stack.mjoin | Join stacks intended to be run with different likelihoods |
inlabru | inlabru |
inlabru-deprecated | Deprecated functions in inlabru |
int | Weighted summation (integration) of data frame subsets |
ipoints | Generate integration points |
lambda1_1D | 1-Dimensional Homogeneous Poisson example. |
lambda2_1D | 1-Dimensional NonHomogeneous Poisson example. |
lambda3_1D | 1-Dimensional NonHomogeneous Poisson example. |
lgcp | Log Gaussian Cox process (LGCP) inference using INLA |
like | Likelihood construction for usage with 'bru()' |
like_list | Likelihood construction for usage with 'bru()' |
like_list.bru_like | Likelihood construction for usage with 'bru()' |
like_list.list | Likelihood construction for usage with 'bru()' |
mexdolphin | Pan-tropical spotted dolphins in the Gulf of Mexico |
mrsea | Marine renewables strategic environmental assessment |
multiplot | Multiple ggplots on a page. |
names.bru_mapper_collect | Implementation methods for mapper objects |
names.bru_mapper_multi | Implementation methods for mapper objects |
names<-.bru_mapper_collect | Implementation methods for mapper objects |
names<-.bru_mapper_multi | Implementation methods for mapper objects |
pixels | Generate 'SpatialPixels' covering an 'inla.mesh' |
plot.bru | Plot method for posterior marginals estimated by bru |
plot.prediction | Plot prediction using ggplot2 |
plotsample | Create a plot sample. |
point2count | Convert a plot sample of points into one of counts. |
Poisson1_1D | 1-Dimensional Homogeneous Poisson example. |
Poisson2_1D | 1-Dimensional NonHomogeneous Poisson example. |
Poisson3_1D | 1-Dimensional NonHomogeneous Poisson example. |
predict.bru | Prediction from fitted bru model |
print.summary_bru | Summary for an inlabru fit |
print.summary_bru_info | Methods for bru_info objects |
print.summary_bru_options | Print inlabru options |
pts1 | 1-Dimensional Homogeneous Poisson example. |
pts2 | 1-Dimensional NonHomogeneous Poisson example. |
pts3 | 1-Dimensional NonHomogeneous Poisson example. |
row_kron | Row-wise Kronecker products |
sample.lgcp | Sample from an inhomogeneous Poisson process |
seals | Seal pups |
shrimp | Blue and red shrimp in the Western Mediterranean Sea |
sline | Convert data frame to SpatialLinesDataFrame |
spatial.to.ppp | Convert SpatialPoints and boundary polygon to spatstat ppp object |
spde.posterior | Posteriors of SPDE hyper parameters and Matern correlation or covariance function. |
spoly | Convert a data.frame of boundary points into a SpatialPolgonsDataFrame |
stransform | Coordinate transformation for spatial objects |
summary.bru | Summary for an inlabru fit |
summary.bru_info | Methods for bru_info objects |
summary.bru_options | Print inlabru options |
summary_bru | Deprecated functions in inlabru |
toygroups | Simulated 1D animal group locations and group sizes |
vertices | Vertices |
vertices-method | Vertices |
vertices.inla.mesh | Extract vertex locations from an 'inla.mesh' |
[.bru_like_list | Likelihood construction for usage with 'bru()' |
[.bru_mapper_collect | Implementation methods for mapper objects |
[.bru_mapper_multi | Implementation methods for mapper objects |
[.component_list | Methods for inlabru component lists |