api1_url |
Get full Genesys API v1 URL for a specific path |
api2_url |
Get full Genesys API v1 URL for a specific path |
authorization |
Provide OAuth2 token to use for authorization with Genesys |
check_country |
Run Land-or-Sea check on MCPD data. Uploads only rows where ORIGCTY, DECLATITUDE and DECLONGITUDE are provided. |
check_landorsea |
Run Land-or-Sea check on MCPD data using https://validator.genesys-pgr.org. Uploads only rows where DECLATITUDE and DECLONGITUDE are provided. In practice it is better to use 'check_country' if ORIGCTY data exists. |
check_taxonomy |
Check MCPD taxonomic data (GENUS, SPECIES, SPAUTHOR, SUBTAXA, SUBTAUTHOR) using https://validator.genesys-pgr.org. |
client_login |
Login to Genesys as a service client (system-to-system) |
download_mcpd |
Download all passport data for one genebank in Excel format and save it to disk |
download_pdci |
Download PDCI data for one genebank in Excel format and save it to disk. |
fetch_accessions |
Fetch accession passport data |
filter_DOI |
Add filter on accession DOI |
filter_GENUS |
Add filter by genus |
filter_INSTCODE |
Add filter by genus |
filter_ORIGCTY |
Add filter on Country of origin of material |
filter_SAMPSTAT |
Add filter on Biological status of sample |
filter_SPECIES |
Add filter on specific epithet |
get_accessions |
Fetch accession passport data |
list_crops |
Fetch Genesys crops. Note that the list of Genesys crops does not fully correspond with various CROPNAME in MCPD provided by genebanks. |
list_institutes |
List FAO WIEWS institutes. |
list_species |
Fetch taxonomic data of selected accessions. |
mcpd_filter |
Make or adjust filter using MCPD terminology |
me |
Who am i? |
print_setup |
Print Genesys client configuration |
setup |
Configure the Genesys environment |
setup_production |
Setup for Genesys Production |
setup_sandbox |
Setup for Genesys Sandbox |
user_login |
Login to Genesys as a user |