Last updated on 2024-05-03 16:54:29 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3 | 14.84 | 114.71 | 129.55 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.3 | 159.39 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3 | 159.00 | NOTE | |||
| r-devel-windows-x86_64 | 1.3 | 13.00 | 104.00 | 117.00 | NOTE | |
| r-patched-linux-x86_64 | 1.3 | 15.40 | 108.28 | 123.68 | NOTE | |
| r-release-linux-x86_64 | 1.3 | 14.80 | 112.29 | 127.09 | NOTE | |
| r-release-macos-arm64 | 1.3 | 46.00 | NOTE | |||
| r-release-windows-x86_64 | 1.3 | 12.00 | 100.00 | 112.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.3 | 56.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3 | 130.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3 | 16.00 | 125.00 | 141.00 | OK |
Version: 1.3
Check: Rd files
Result: NOTE
checkRd: (-1) MapGAM-package.Rd:28: Lost braces
28 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data: MapGAM}. The R Journal 2020, 12:32-48.
| ^
checkRd: (-1) MapGAM-package.Rd:32: Lost braces
32 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary regression approach}. J Roy Stat Soc C-App 1998, 47:559-573.
| ^
checkRd: (-1) MapGAM-package.Rd:34: Lost braces
34 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.
| ^
checkRd: (-1) MapGAM-package.Rd:36: Lost braces
36 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11.
| ^
checkRd: (-1) MapGAM-package.Rd:38: Lost braces
38 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.
| ^
checkRd: (-1) MapGAM-package.Rd:40: Lost braces
40 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.
| ^
checkRd: (-1) modgam.Rd:108: Lost braces
108 | Bai L, Gillen DL, Bartell SM, Vieira VM. \doi{10.32614/RJ-2020-001}{Mapping smoothed spatial effect estimates from individual-level data: MapGAM}. The R Journal 2020, 12:32-48.
| ^
checkRd: (-1) modgam.Rd:112-113: Lost braces
112 | Kelsall J, Diggle P. \doi{10.1111/1467-9876.00128}{Spatial variation in risk of disease: a nonparametric binary
| ^
checkRd: (-1) modgam.Rd:115: Lost braces
115 | Vieira V, Webster T, Weinberg J, Aschengrau A, Ozonoff D. \doi{10.1186/1476-069X-4-11}{Spatial analysis of lung, colorectal, and breast cancer on Cape Cod: An application of generalized additive models to case-control data}. Environmental Health 2005, 4:11.
| ^
checkRd: (-1) modgam.Rd:117: Lost braces
117 | Webster T, Vieira V, Weinberg J, Aschengrau A. \doi{10.1186/1476-072X-5-26}{Method for mapping population-based case-control studies using Generalized Additive Models}. International Journal of Health Geographics 2006, 5:26.
| ^
checkRd: (-1) modgam.Rd:119: Lost braces
119 | Young RL, Weinberg J, Vieira V, Ozonoff A, Webster TF. \doi{10.1186/1476-072X-9-37}{A power comparison of generalized additive models and the spatial scan statistic in a case-control setting}. International Journal of Health Geographics 2010, 9:37.
| ^
checkRd: (-1) sampcont.Rd:74: Lost braces
74 | Tang IW, Bartell SM, Vieira VM. \doi{10.1016/j.sste.2023.100584}{Unmatched Spatially Stratified Controls: A simulation study examining efficiency and precision using spatially-diverse controls and generalized additive models}. Spatial and Spatio-temporal Epidemiology 2023, 45:100584.
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 1.3
Check: examples
Result: ERROR
Running examples in 'MapGAM-Ex.R' failed
The error most likely occurred in:
> ### Name: trimdata
> ### Title: Trim a Data Set To Map Boundaries
> ### Aliases: trimdata
> ### Keywords: misc
>
> ### ** Examples
>
>
> # This example uses the "sf" package to read in an external ESRI shapefile for Maine
> if (require(sf)) {
+ # download example shapefile zip from github, and unzip
+ zippath <- paste(tempdir(),"Income_schooling.zip",sep="/")
+ download.file("https://github.com/mgimond/Spatial/raw/main/Data/Income_schooling.zip",
+ destfile = zippath, mode='wb')
+ unzip(zippath, exdir = tempdir())
+
+ # read shapefile into sf format
+ shppath <- paste(tempdir(),"Income_schooling.shp",sep="/")
+ basemap0 <- st_read(shppath)
+
+ # Create example data by randomly sampling within bounding box
+ rs <- st_bbox(basemap0) # get ranges of X and Y
+ MEdata <- data.frame(X=runif(300,rs[1],rs[3]), Y=runif(300,rs[2],rs[4]))
+ plot(basemap0["NAME"], reset=FALSE)
+ plot(st_as_sf(MEdata,coords=1:2), add=TRUE) # plot data in black
+
+ # trim data to basemap, and plot trimmed data with red X's
+ dME <- trimdata(MEdata, basemap0)
+ plot(st_as_sf(dME,coords=1:2), col="red", pch="X", add=TRUE)
+ dev.off() # clear map settings
+ }
Loading required package: sf
Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.3.1; sf_use_s2() is TRUE
trying URL 'https://github.com/mgimond/Spatial/raw/main/Data/Income_schooling.zip'
Warning in download.file("https://github.com/mgimond/Spatial/raw/main/Data/Income_schooling.zip", :
URL 'https://raw.githubusercontent.com/mgimond/Spatial/main/Data/Income_schooling.zip': status was 'SSL connect error'
Error in download.file("https://github.com/mgimond/Spatial/raw/main/Data/Income_schooling.zip", :
cannot open URL 'https://github.com/mgimond/Spatial/raw/main/Data/Income_schooling.zip'
Execution halted
Flavor: r-release-windows-x86_64