CRAN Package Check Results for Package rbiom

Last updated on 2024-02-26 08:48:54 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.3 65.70 52.30 118.00 OK
r-devel-linux-x86_64-debian-gcc 1.0.3 48.58 40.44 89.02 OK
r-devel-linux-x86_64-fedora-clang 1.0.3 166.64 OK
r-devel-linux-x86_64-fedora-gcc 1.0.3 177.52 OK
r-devel-windows-x86_64 1.0.3 48.00 488.00 536.00 NOTE
r-patched-linux-x86_64 1.0.3 62.31 52.68 114.99 OK
r-release-linux-x86_64 1.0.3 63.92 52.34 116.26 OK
r-release-macos-arm64 1.0.3 43.00 NOTE
r-release-macos-x86_64 1.0.3 70.00 NOTE
r-release-windows-x86_64 1.0.3 62.00 1564.00 1626.00 FAIL
r-oldrel-macos-arm64 1.0.3 40.00 NOTE
r-oldrel-windows-x86_64 1.0.3 60.00 0.00 60.00 FAIL

Check Details

Version: 1.0.3
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘rhdf5’ Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64

Version: 1.0.3
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) > > ex1 <- select(biom, c('HMP14', 'HMP22', 'HMP03')) > ex2 <- select(biom, c(32, 11, 28, 16, 46, 5)) > ex3 <- select(biom, 1:50 %% 6 == 0) > ex4 <- select(biom, nRandom = 10) > ex5 <- select(biom, nTop = 5) > ex6 <- select(biom, samples = 10:40, nTop = 20, nRandom = 10) > > > > > cleanEx() > nameEx("sequences") > ### * sequences > > flush(stderr()); flush(stdout()) > > ### Name: sequences > ### Title: DNA sequence associated with each taxonomic identifier. > ### Aliases: sequences > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-release-windows-x86_64

Version: 1.0.3
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) > > taxa.names(biom) %>% head() [1] "UncO2713" "UncO4101" "AnmMass2" "PreBivi6" "CprSpeci" "Unc96922" > > > > > cleanEx() > nameEx("taxa.ranks") > ### * taxa.ranks > > flush(stderr()); flush(stdout()) > > ### Name: taxa.ranks > ### Title: Get the taxa ranks. > ### Aliases: taxa.ranks > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-oldrel-windows-x86_64