ExomeDepth: Calls Copy Number Variants from Targeted Sequence Data

Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders. The method is presented in details in Plagnol et al (2012) <https://pubmed.ncbi.nlm.nih.gov/22942019/>.

Version: 1.1.16
Depends: R (≥ 3.4.0)
Imports: Biostrings, IRanges, Rsamtools, GenomicRanges (≥ 1.23.0), aod, VGAM (≥ 0.8.4), methods, GenomicAlignments, dplyr, magrittr
Suggests: knitr
Published: 2022-11-03
Author: Vincent Plagnol [aut, cre], Gerard Jungman [ctb] (Author of included GSL fragments), Brian Gough [ctb] (Author of included GSL fragments), Jorma O Tahtinen [ctb] (Author of included GSL fragments), Gert Van den Eynde [ctb] (Author of included GSL fragments)
ExomeDepth author details
Maintainer: Vincent Plagnol <vincent.plagnol at gmail.com>
License: GPL-3
NeedsCompilation: yes
CRAN checks: ExomeDepth results


Reference manual: ExomeDepth.pdf
Vignettes: ExomeDepth


Package source: ExomeDepth_1.1.16.tar.gz
Windows binaries: r-devel: ExomeDepth_1.1.16.zip, r-release: ExomeDepth_1.1.16.zip, r-oldrel: ExomeDepth_1.1.16.zip
macOS binaries: r-release (arm64): ExomeDepth_1.1.16.tgz, r-oldrel (arm64): ExomeDepth_1.1.16.tgz, r-release (x86_64): ExomeDepth_1.1.16.tgz, r-oldrel (x86_64): ExomeDepth_1.1.16.tgz


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