PCBS: Principle Component BiSulfite

A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principle Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.

Version:	0.1.0
Depends:	R (≥ 2.10)
Imports:	ggplot2, tibble, ggrepel, dplyr, data.table
Published:	2024-04-23
Author:	Kathryn Lande [aut, cre, cph]
Maintainer:	Kathryn Lande <kathryn.lande at mail.mcgill.ca>
BugReports:	https://github.com/katlande/PCBS/issues
License:	GPL-3
URL:	https://github.com/katlande/PCBS
NeedsCompilation:	no
CRAN checks:	PCBS results

Documentation:

Reference manual:

PCBS.pdf

Downloads:

Package source:	PCBS_0.1.0.tar.gz
Windows binaries:	r-devel: PCBS_0.1.0.zip, r-release: PCBS_0.1.0.zip, r-oldrel: PCBS_0.1.0.zip
macOS binaries:	r-release (arm64): PCBS_0.1.0.tgz, r-oldrel (arm64): PCBS_0.1.0.tgz, r-release (x86_64): PCBS_0.1.0.tgz, r-oldrel (x86_64): PCBS_0.1.0.tgz

Linking:

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