saasCNV: Somatic Copy Number Alteration Analysis Using Sequencing and SNP Array Data

Perform joint segmentation on two signal dimensions derived from total read depth (intensity) and allele specific read depth (intensity) for whole genome sequencing (WGS), whole exome sequencing (WES) and SNP array data.

Version: 0.3.4
Depends: R (≥ 2.10), RANN, DNAcopy
Published: 2016-05-18
DOI: 10.32614/CRAN.package.saasCNV
Author: Zhongyang Zhang [aut, cre], Ke Hao [aut], Nancy R. Zhang [ctb]
Maintainer: Zhongyang Zhang <zhongyang.zhang at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: ChangeLog
CRAN checks: saasCNV results


Reference manual: saasCNV.pdf


Package source: saasCNV_0.3.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): saasCNV_0.3.4.tgz, r-oldrel (arm64): saasCNV_0.3.4.tgz, r-release (x86_64): saasCNV_0.3.4.tgz, r-oldrel (x86_64): saasCNV_0.3.4.tgz


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