phyloregion: Biogeographic Regionalization and Macroecology

Computational infrastructure for biogeography, community ecology, and biodiversity conservation (Daru et al. 2020) <doi:10.1111/2041-210X.13478>. It is based on the methods described in Daru et al. (2020) <doi:10.1038/s41467-020-15921-6>. The original conceptual work is described in Daru et al. (2017) <doi:10.1016/j.tree.2017.08.013> on patterns and processes of biogeographical regionalization. Additionally, the package contains fast and efficient functions to compute more standard conservation measures such as phylogenetic diversity, phylogenetic endemism, evolutionary distinctiveness and global endangerment, as well as compositional turnover (e.g., beta diversity).

Version: 1.0.8
Depends: R (≥ 4.0.0)
Imports: ape, phangorn, Matrix, betapart, parallel, methods, colorspace, igraph, clustMixType, maptpx, terra, vegan, predicts, smoothr
Suggests: tinytest, knitr, rmarkdown, mapproj, survival, rJava, phyloseq, V8
Published: 2023-08-15
DOI: 10.32614/CRAN.package.phyloregion
Author: Barnabas H. Daru ORCID iD [aut, cre, cph], Piyal Karunarathne ORCID iD [aut], Klaus Schliep ORCID iD [aut], Xiaobei Zhao [ctb], Albin Sandelin [ctb], Luciano Pataro [ctb]
Maintainer: Barnabas H. Daru <darunabas at>
License: AGPL-3
NeedsCompilation: no
Citation: phyloregion citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: phyloregion results


Reference manual: phyloregion.pdf
Vignettes: Benchmarking phyloregion
Fast Evolutionary Distinctiveness
An introduction to the phyloregion package


Package source: phyloregion_1.0.8.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): phyloregion_1.0.8.tgz, r-oldrel (arm64): phyloregion_1.0.8.tgz, r-release (x86_64): phyloregion_1.0.8.tgz, r-oldrel (x86_64): phyloregion_1.0.8.tgz
Old sources: phyloregion archive

Reverse dependencies:

Reverse imports: canaper


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