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| calcAUC | Fast computation of the AUC w.r.t. to the ROC. |
| calcBrier | Calculate the Brier score |
| calcDev | Calculate the deviance |
| calcMis | Calculate the misclassification rate |
| calcMSE | Calculate the MSE |
| calcNCE | Calculate the normalized cross entropy |
| calcNRMSE | Calculate the NRMSE |
| cooling.schedule | Define the cooling schedule for simulated annealing |
| fancy.plot | Plot a logic decision tree |
| fit4plModel | Fitting 4pL models |
| logicDT | Fitting logic decision trees |
| logicDT.bagging | Fitting bagged logicDT models |
| logicDT.bagging.default | Fitting bagged logicDT models |
| logicDT.bagging.formula | Fitting bagged logicDT models |
| logicDT.boosting | Fitting boosted logicDT models |
| logicDT.boosting.default | Fitting boosted logicDT models |
| logicDT.boosting.formula | Fitting boosted logicDT models |
| logicDT.default | Fitting logic decision trees |
| logicDT.formula | Fitting logic decision trees |
| plot.logicDT | Plot a logic decision tree |
| plot.vim | Plot calculated VIMs |
| predict.4pl | Prediction for 4pL models |
| predict.geneticLogicPET | Prediction for logicDT models |
| predict.logic.bagged | Prediction for logicDT models |
| predict.logic.boosted | Prediction for logicDT models |
| predict.logicDT | Prediction for logicDT models |
| splitSNPs | Split biallelic SNPs into binary variables |
| tree.control | Control parameters for fitting decision trees |
| vim | Variable Importance Measures (VIMs) |