Interface to the 'Pharmpy' 'Pharmacometrics' Library


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Documentation for package ‘pharmr’ version 0.33.1

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add_covariate_effect add_covariate_effect
add_estimation_step add_estimation_step
add_iiv add_iiv
add_individual_parameter add_individual_parameter
add_iov add_iov
add_peripheral_compartment add_peripheral_compartment
append_estimation_step_options append_estimation_step_options
calculate_eta_shrinkage calculate_eta_shrinkage
calculate_individual_parameter_statistics calculate_individual_parameter_statistics
calculate_individual_shrinkage calculate_individual_shrinkage
calculate_pk_parameters_statistics calculate_pk_parameters_statistics
check_pharmpy Checks Pharmr and Pharmpy version.
convert_model convert_model
copy_model copy_model
create_joint_distribution create_joint_distribution
create_results create_results
create_rng create_rng
evaluate_expression evaluate_expression
fit fit
fix_parameters fix_parameters
fix_parameters_to fix_parameters_to
get_model_covariates get_model_covariates
get_number_of_individuals get_number_of_individuals
get_number_of_observations get_number_of_observations
get_number_of_observations_per_individual get_number_of_observations_per_individual
get_observations get_observations
has_additive_error_model has_additive_error_model
has_combined_error_model has_combined_error_model
has_proportional_error_model has_proportional_error_model
has_zero_order_absorption has_zero_order_absorption
install_pharmpy Install Pharmpy
load_example_model load_example_model
plot_individual_predictions plot_individual_predictions
plot_iofv_vs_iofv plot_iofv_vs_iofv
predict_influential_individuals predict_influential_individuals
predict_influential_outliers predict_influential_outliers
predict_outliers predict_outliers
print_model_symbols print_model_symbols
read_model read_model
read_model_from_database read_model_from_database
read_model_from_string read_model_from_string
read_results read_results
remove_error_model remove_error_model
remove_estimation_step remove_estimation_step
remove_iiv remove_iiv
remove_iov remove_iov
remove_lag_time remove_lag_time
remove_peripheral_compartment remove_peripheral_compartment
reset_index Reset index
run_tool run_tool
sample_individual_estimates sample_individual_estimates
sample_parameters_from_covariance_matrix sample_parameters_from_covariance_matrix
sample_parameters_uniformly sample_parameters_uniformly
set_additive_error_model set_additive_error_model
set_bolus_absorption set_bolus_absorption
set_combined_error_model set_combined_error_model
set_dtbs_error_model set_dtbs_error_model
set_estimation_step set_estimation_step
set_first_order_absorption set_first_order_absorption
set_first_order_elimination set_first_order_elimination
set_iiv_on_ruv set_iiv_on_ruv
set_initial_estimates set_initial_estimates
set_lag_time set_lag_time
set_michaelis_menten_elimination set_michaelis_menten_elimination
set_mixed_mm_fo_elimination set_mixed_mm_fo_elimination
set_name set_name
set_ode_solver set_ode_solver
set_peripheral_compartments set_peripheral_compartments
set_power_on_ruv set_power_on_ruv
set_proportional_error_model set_proportional_error_model
set_seq_zo_fo_absorption set_seq_zo_fo_absorption
set_transit_compartments set_transit_compartments
set_weighted_error_model set_weighted_error_model
set_zero_order_absorption set_zero_order_absorption
set_zero_order_elimination set_zero_order_elimination
split_joint_distribution split_joint_distribution
summarize_modelfit_results summarize_modelfit_results
transform_etas_boxcox transform_etas_boxcox
transform_etas_john_draper transform_etas_john_draper
transform_etas_tdist transform_etas_tdist
unfix_parameters unfix_parameters
unfix_parameters_to unfix_parameters_to
update_inits update_inits
update_source update_source
use_thetas_for_error_stdev use_thetas_for_error_stdev
write_model write_model