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| dbd | Decompress Byte Data |
| gid | Infer Sample ID from a symmetric matrix |
| lc | Line Count |
| readBED | Read BED file |
| readBIM | Read BIM file |
| readBSM | Read Binary Symmetric Matrix (BSM) |
| readFAM | Read FAM file |
| readGRM | Read Genetic Related Matrix (GRM) of GCTA |
| readIBS | Read PLINK Binary IBS matrix |
| readREL | Read PLINK Binary REL matrix |
| readVCM | Read Variant Count Matrix (VCM) accompanying a GCTA GRM |
| saveBSM | Save Symmetric Matrix to Binary |
| saveGRM | Save symmetic matrix to GCTA GRM format. |
| scanBED | Scan genotypes in PLINK BED(s) |
| testReadBED | Test BED Reader |
| testReadBSM | Test Genetic Relatedness Matrix Reader |
| testScanBED | Test BED Scanner |