Schloss Lab Tools for Reproducible Microbiome Research


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Documentation for package ‘schtools’ version 0.1.1

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close_enough Check whether two numeric vectors are close enough for gov't work.
format_number Format human-readable numbers.
inline_hook Inline hook for knitr to paste human-readable numbers and nice lists.
is_nearly_whole Checks whether a number is near to a whole number
is_nondesc Check whether all elements given are sorted in non-descending order
load_deps Install & load packages
parse_tax Convert taxonomy strings into dataframe of labels based on taxonomic classification
paste_oxford_list Create a prose string from a list or vector
read_dist Read in lower left triangular matrix from file
read_tax Read in a taxonomy file and parse it to a wide dataframe
schtools schtools: Schloss Lab Tools for Reproducible Microbiome Research
set_knitr_opts Set knitr chunk options & inline hook