Generic and Biological Sequences


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Documentation for package ‘sequences’ version 0.5.9

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sequences-package A short demo package featuring biological sequences.
alphabet Class "GenericSeq"
alphabet-method Class "GenericSeq"
class:DnaSeq Class "DnaSeq" and "RnaSeq"
class:GenericSeq Class "GenericSeq"
class:RnaSeq Class "DnaSeq" and "RnaSeq"
class:Seq Class '"Seq"'
comp Class "DnaSeq" and "RnaSeq"
comp-method Class "DnaSeq" and "RnaSeq"
dnaseq An 'DnaSeq' example.
DnaSeq-class Class "DnaSeq" and "RnaSeq"
gccount Count bases in sequence
gccount2 Count bases in sequence (using Rcpp)
GenericSeq-class Class "GenericSeq"
id Class "GenericSeq"
id-method Class "GenericSeq"
id<- Class "GenericSeq"
id<--method Class "GenericSeq"
length-method Class "GenericSeq"
print-method Class "GenericSeq"
readFasta Read fasta files.
rev Class "GenericSeq"
rev-method Class "GenericSeq"
RnaSeq-class Class "DnaSeq" and "RnaSeq"
Seq Class '"Seq"'
seq Class "GenericSeq"
Seq-class Class '"Seq"'
seq-method Class "GenericSeq"
seq<- Class "GenericSeq"
seq<--method Class "GenericSeq"
sequences A short demo package featuring biological sequences.
show-method Class "GenericSeq"
transcribe Class "DnaSeq" and "RnaSeq"
transcribe-method Class "DnaSeq" and "RnaSeq"
[-method Class "GenericSeq"