* using log directory 'd:/Rcompile/CRANpkg/local/4.4/GGMselect.Rcheck' * using R version 4.4.0 alpha (2024-03-26 r86209 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'GGMselect/DESCRIPTION' ... OK * this is package 'GGMselect' version '0.1-12.7' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GGMselect' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.2.0' * used Fortran compiler: 'GNU Fortran (GCC) 13.2.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [2s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [42s] ERROR Running 'bsch.R' [2s] Comparing 'bsch.Rout' to 'bsch.Rout.save' ...3a4 > Running 'penInf.R' [5s] Comparing 'penInf.Rout' to 'penInf.Rout.save' ...5a6 > Running 'sh9.2012.R' [3s] Comparing 'sh9.2012.Rout' to 'sh9.2012.Rout.save' ...3a4 > Running 'shPUR.R' [2s] Comparing 'shPUR.Rout' to 'shPUR.Rout.save' ...3a4 > Running 'test1Fast.R' [4s] Comparing 'test1Fast.Rout' to 'test1Fast.Rout.save' ...3a4 > Running 'test1QE.R' [2s] Comparing 'test1QE.Rout' to 'test1QE.Rout.save' ...3a4 > Running 'test2Fast.R' [4s] Comparing 'test2Fast.Rout' to 'test2Fast.Rout.save' ...3a4 > Running 'test2QE.R' [1s] Running 'test3Fast.R' [5s] Comparing 'test3Fast.Rout' to 'test3Fast.Rout.save' ...3a4 > Running 'test3QE.R' [1s] Running 'test5Fast.R' [5s] Comparing 'test5Fast.Rout' to 'test5Fast.Rout.save' ...3a4 > Running 'test7Fast.R' [5s] Comparing 'test7Fast.Rout' to 'test7Fast.Rout.save' ...3a4 > Running 'testMyFam.R' [1s] Comparing 'testMyFam.Rout' to 'testMyFam.Rout.save' ...3a4 > Running the tests in 'tests/test2QE.R' failed. Complete output: > library(GGMselect) Loading required package: mvtnorm > itest=2 > # +++++++++++++++++++++++++++++++++++++++++++++++++ > p=30 > n=30 > eta=0.13 > dmax=3 > iG = 7 > iS = 9 > set.seed(iG) > Gr <- simulateGraph(p,eta) > set.seed(iS*(pi/3.1415)**iG) > X <- rmvnorm(n, mean=rep(0,p), sigma=Gr$C) > > K=2.5 > > # ptm <- proc.time() > > print(selectQE(X, dmax, K, verbose=TRUE)) *** Run family QE Number of RSS calculated: 122670 *** Running loop GrSymQE from iK = 1 to 1 *** Running loop GrSymQE for iK = 1 and d = 1 to 10 *** GrSymQE: iK = 1 d = 1 *** GrSymQE: iK = 1 d = 2 *** GrSymQE: iK = 1 d = 3 *** GrSymQE: iK = 1 d = 4 *** GrSymQE: iK = 1 d = 5 *** GrSymQE: iK = 1 d = 6 *** GrSymQE: iK = 1 d = 7 *** GrSymQE: iK = 1 d = 8 Running the tests in 'tests/test3QE.R' failed. Complete output: > library(GGMselect) Loading required package: mvtnorm > itest=3 > # +++++++++++++++++++++++++++++++++++++++++++++++++ > p=30 > n=30 > eta=0.17 > dmax=3 > iG = 7 > iS = 9 > set.seed(iG) > Gr <- simulateGraph(p,eta) > set.seed(iS*(pi/3.1415)**iG) > X <- rmvnorm(n, mean=rep(0,p), sigma=Gr$C) > > K=2.5 > > # ptm <- proc.time() > > print(selectQE(X, dmax, K, verbose=TRUE)) *** Run family QE Number of RSS calculated: 122670 *** Running loop GrSymQE from iK = 1 to 1 *** Running loop GrSymQE for iK = 1 and d = 1 to 10 *** GrSymQE: iK = 1 d = 1 *** GrSymQE: iK = 1 d = 2 *** GrSymQE: iK = 1 d = 3 *** GrSymQE: iK = 1 d = 4 *** GrSymQE: iK = 1 d = 5 *** GrSymQE: iK = 1 d = 6 *** GrSymQE: iK = 1 d = 7 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [2s] ERROR Error(s) in re-building vignettes: --- re-building 'Notice.Rnw' using Sweave Loading required package: mvtnorm 'network' 1.18.2 (2023-12-04), part of the Statnet Project * 'news(package="network")' for changes since last version * 'citation("network")' for citation information * 'https://statnet.org' for help, support, and other information * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [2s] OK * DONE Status: 2 ERRORs