* using log directory 'd:/Rcompile/CRANpkg/local/4.4/SPOT.Rcheck' * using R Under development (unstable) (2024-03-24 r86185 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'SPOT/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SPOT' version '2.11.14' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SPOT' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [3s] OK * checking whether the package can be loaded with stated dependencies ... [3s] OK * checking whether the package can be unloaded cleanly ... [3s] OK * checking whether the namespace can be loaded with stated dependencies ... [3s] OK * checking whether the namespace can be unloaded cleanly ... [3s] OK * checking loading without being on the library search path ... [3s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [18s] OK * checking Rd files ... [3s] NOTE checkRd: (-1) buildBO.Rd:22: Lost braces 22 | \item{\code{lambdaLower}}{ lower boundary for log10{lambda}, default is \code{-6}} | ^ checkRd: (-1) buildBO.Rd:23: Lost braces 23 | \item{\code{lambdaUpper}}{ upper boundary for log10{lambda}, default is \code{0}} | ^ checkRd: (-1) buildBO.Rd:41: Lost braces 41 | \item{\code{lambdaLower}}{ lower boundary for log10{lambda}, default is \code{-6}} | ^ checkRd: (-1) buildBO.Rd:42: Lost braces 42 | \item{\code{lambdaUpper}}{ upper boundary for log10{lambda}, default is \code{0}} | ^ checkRd: (-1) buildKriging.Rd:28: Lost braces 28 | \item{\code{lambdaLower}}{lower boundary for log10{lambda}, default is \code{-6}} | ^ checkRd: (-1) buildKriging.Rd:29: Lost braces 29 | \item{\code{lambdaUpper}}{upper boundary for log10{lambda}, default is \code{0}} | ^ checkRd: (-1) checkLowerSmallerThanUpper.Rd:15-19: Lost braces 15 | checkLowerNotEqualsUpper <- function(lower,upper){ | ^ checkRd: (-1) checkLowerSmallerThanUpper.Rd:16-18: Lost braces 16 | if(any(lower == upper)){ | ^ checkRd: (-1) optimDE.Rd:38: Lost braces 38 | code{DEoptim} package. It is basically a wrapper, to enable DEoptim for usage | ^ checkRd: (-1) optimGenoud.Rd:38: Lost braces 38 | code{rgenoud} package. It is basically a wrapper, to enable genoud for usage | ^ checkRd: (-1) optimLBFGSB.Rd:40: Lost braces 40 | which is part of the code{stats} package. It is basically a wrapper, to enable L-BFGS-B for usage | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE Documented arguments not in \usage in Rd file 'checkFunEvalsDesignSize.Rd': 'fun' 'upper' Documented arguments not in \usage in Rd file 'print.spotBOModel.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotGaussianProcessModel.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotLOESS.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotLassoModel.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotLinearModel.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotRSM.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotRandomForest.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotRanger.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotSeverity.Rd': 'object' Documented arguments not in \usage in Rd file 'print.spotTreeModel.Rd': 'object' Documented arguments not in \usage in Rd file 'simulationSpectral.Rd': '...' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [3s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [62s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [65s] OK Running 'testthat.R' [64s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [92s] OK * checking PDF version of manual ... [27s] OK * checking HTML version of manual ... [34s] OK * DONE Status: 2 NOTEs