* using log directory 'd:/Rcompile/CRANpkg/local/4.4/STEPCAM.Rcheck' * using R Under development (unstable) (2024-03-24 r86185 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'STEPCAM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'STEPCAM' version '1.2' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'STEPCAM' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s] OK * checking whether the package can be loaded with stated dependencies ... [2s] OK * checking whether the package can be unloaded cleanly ... [2s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s] OK * checking whether the namespace can be unloaded cleanly ... [2s] OK * checking loading without being on the library search path ... [2s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [8s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) STEPCAM_ABC.Rd:19: Lost braces 19 | \code{rows}{ every row corresponds to a different plot or community} \cr | ^ checkRd: (-1) STEPCAM_ABC.Rd:20: Lost braces 20 | \code{columns}{ every column corresponds to a different species.} \cr | ^ checkRd: (-1) STEPCAM_ABC.Rd:25: Lost braces 25 | \code{rows}{ every row corresponds to a different species} \cr | ^ checkRd: (-1) STEPCAM_ABC.Rd:26: Lost braces 26 | \code{columns}{ the first column contains the name of the species, every consecutive column corresponds to a different trait} \cr | ^ checkRd: (-1) plotSTEPCAM.Rd:16: Lost braces 16 | - \code{DA}{ a vector containing the posterior distribution for the parameter dispersal assembly} \cr | ^ checkRd: (-1) plotSTEPCAM.Rd:17: Lost braces 17 | - \code{HF}{ a vector containing the posterior distribution for the parameter habitat filtering} \cr | ^ checkRd: (-1) plotSTEPCAM.Rd:18: Lost braces 18 | - \code{LS}{ a vector containing the posterior distribution for the parameter limiting similarity} \cr | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [3s] OK Running 'testthat.R' [3s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [45s] OK * checking PDF version of manual ... [21s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 1 NOTE