* using log directory 'd:/Rcompile/CRANpkg/local/4.4/autoCovariateSelection.Rcheck' * using R Under development (unstable) (2024-03-24 r86185 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'autoCovariateSelection/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'autoCovariateSelection' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'autoCovariateSelection' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s] OK * checking Rd files ... [1s] NOTE checkRd: (-1) get_candidate_covariates.Rd:50: Lost braces 50 | \item \code{covars_data} {The \code{data.frame} that is filtered out of \code{df} with only the selected \code{covars}}. The values of the | ^ checkRd: (-1) get_candidate_covariates.Rd:53: Lost braces 53 | \item \code{patientIds} {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}} | ^ checkRd: (-1) get_prioritised_covariates.Rd:40: Lost braces 40 | \item \code{multiplicative_bias}{The absolute log of the multiplicative bias term for each of the auto-selected prioritised covariates} | ^ checkRd: (-1) get_recurrence_covariates.Rd:34: Lost braces 34 | \item \code{patientIds} {The list of patient ids present in the original input \code{df}. This is exactly the same as the input \code{patientIdVector}} | ^ * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [6s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [4s] OK Running 'testthat.R' [4s] * checking PDF version of manual ... [28s] OK * checking HTML version of manual ... [1s] OK * DONE Status: 1 NOTE