CRAN Package Check Results for Package HaDeX

Last updated on 2021-09-19 04:53:03 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.2 8.30 137.87 146.17 OK
r-devel-linux-x86_64-debian-gcc 1.2.2 6.95 98.09 105.04 OK
r-devel-linux-x86_64-fedora-clang 1.2.2 171.96 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.2 158.89 NOTE
r-devel-windows-x86_64 1.2.2 11.00 134.00 145.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 1.2.2 ERROR
r-patched-linux-x86_64 1.2.2 13.64 130.99 144.63 OK
r-patched-solaris-x86 1.2.2 183.90 WARN
r-release-linux-x86_64 1.2.2 7.23 132.69 139.92 OK
r-release-macos-arm64 1.2.2 NOTE
r-release-macos-x86_64 1.2.2 NOTE
r-release-windows-ix86+x86_64 1.2.2 21.00 166.00 187.00 NOTE
r-oldrel-macos-x86_64 1.2.2 NOTE
r-oldrel-windows-ix86+x86_64 1.2.2 24.00 174.00 198.00 NOTE

Check Details

Version: 1.2.2
Check: installed package size
Result: NOTE
     installed size is 8.2Mb
     sub-directories of 1Mb or more:
     HaDeX 4.1Mb
     doc 4.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2.2
Check: dependencies in R code
Result: NOTE
    Namespaces in Imports field not imported from:
     ‘DT’ ‘gsubfn’ ‘stringr’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.2.2
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     WARNING: installation-time patches will not be applied, could not get the patches index
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.2.2
Check: PDF version of manual
Result: WARN
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.2.2
Check: PDF version of manual without hyperrefs or index
Result: ERROR
    Re-running with no redirection of stdout/stderr.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.2.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘HaDeX.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Quitting from lines 41-44 (HaDeX.Rmd)
    Error: processing vignette 'HaDeX.Rmd' failed with diagnostics:
    there is no package called 'webshot'
    --- failed re-building ‘HaDeX.Rmd’
    
    --- re-building ‘datafiles.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    --- finished re-building ‘datafiles.Rmd’
    
    --- re-building ‘mass_comparison.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    
    Attaching package: 'gridExtra'
    
    The following object is masked from 'package:dplyr':
    
     combine
    
    `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
    `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
    --- finished re-building ‘mass_comparison.Rmd’
    
    --- re-building ‘transformation.Rmd’ using rmarkdown
    Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    `summarise()` has grouped output by 'Sequence', 'Start', 'End'. You can override using the `.groups` argument.
    `summarise()` has grouped output by 'Sequence', 'Start', 'End'. You can override using the `.groups` argument.
    `summarise()` has grouped output by 'Sequence', 'Start'. You can override using the `.groups` argument.
    --- finished re-building ‘transformation.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘HaDeX.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86