CRAN Package Check Results for Package HyPhy

Last updated on 2021-12-02 00:49:12 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 5.70 37.71 43.41 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 2.60 28.48 31.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 62.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 53.80 NOTE
r-devel-windows-x86_64-new-UL 1.0 10.00 74.00 84.00 NOTE
r-devel-windows-x86_64-new-TK 1.0 NOTE
r-devel-windows-x86_64-old 1.0 8.00 42.00 50.00 NOTE
r-patched-linux-x86_64 1.0 6.49 34.97 41.46 NOTE
r-patched-solaris-x86 1.0 77.20 NOTE
r-release-linux-x86_64 1.0 4.75 36.49 41.24 NOTE
r-release-macos-arm64 1.0 NOTE
r-release-macos-x86_64 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 10.00 56.00 66.00 NOTE
r-oldrel-macos-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 10.00 57.00 67.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'R.utils' 'ape'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    requiprobable: no visible global function definition for 'extract'
    requiprobable : make.tree: no visible global function definition for
     'extract'
    requiprobable : make.tree: no visible global function definition for
     'runif'
    rgenetree: no visible global function definition for 'dbinom'
    rgenetree: no visible global function definition for 'dnbinom'
    rgenetree: no visible global function definition for 'runif'
    rgenetree: no visible global function definition for 'rbinom'
    rgenetree: no visible global function definition for 'rnbinom'
    Undefined global functions or variables:
     dbinom dnbinom extract rbinom rnbinom runif
    Consider adding
     importFrom("stats", "dbinom", "dnbinom", "rbinom", "rnbinom", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'requiprobable.Rd':
     \examples lines wider than 100 characters:
     for (i in 1:10) unlabeled[[i]]$tip.label<-sample(c("A1","A2","B1","B2","B3","C1","C2","C3","C4","C5"))
    
    Rd file 'rgenetree.Rd':
     \examples lines wider than 100 characters:
     ##Now lets start with 3 genes, set the number of genes at each tip of spec and vary mu between the branches of spec
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64