CRAN Package Check Results for Package NMF

Last updated on 2021-10-26 12:54:31 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.23.0 31.66 550.28 581.94 OK
r-devel-linux-x86_64-debian-gcc 0.23.0 24.83 422.62 447.45 OK
r-devel-linux-x86_64-fedora-clang 0.23.0 817.45 NOTE
r-devel-linux-x86_64-fedora-gcc 0.23.0 813.63 NOTE
r-devel-windows-x86_64 0.23.0 52.00 709.00 761.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.23.0 NOTE
r-patched-linux-x86_64 0.23.0 34.95 553.79 588.74 OK
r-patched-solaris-x86 0.23.0 310.80 ERROR --no-vignettes
r-release-linux-x86_64 0.23.0 28.64 557.48 586.12 OK
r-release-macos-arm64 0.23.0 NOTE
r-release-macos-x86_64 0.23.0 NOTE
r-release-windows-ix86+x86_64 0.23.0 48.00 800.00 848.00 OK
r-oldrel-macos-x86_64 0.23.0 NOTE
r-oldrel-windows-ix86+x86_64 0.23.0 66.00 837.00 903.00 OK

Check Details

Version: 0.23.0
Check: package dependencies
Result: NOTE
    Suggests orphaned package: ‘bibtex’
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.23.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.23.0
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocManager’
     All declared Imports should be used.
Flavor: r-patched-solaris-x86

Version: 0.23.0
Flags: --no-vignettes
Check: examples
Result: ERROR
    Running examples in ‘NMF-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: NMFfitX-class
    > ### Title: Virtual Class to Handle Results from Multiple Runs of NMF
    > ### Algorithms
    > ### Aliases: NMFfitX-class
    >
    > ### ** Examples
    >
    > ## Don't show:
    > # roxygen generated flag
    > options(R_CHECK_RUNNING_EXAMPLES_=TRUE)
    > ## End(Don't show)
    >
    > # generate a synthetic dataset with known classes
    > n <- 20; counts <- c(5, 2, 3);
    > V <- syntheticNMF(n, counts)
    >
    > # perform multiple runs of one algorithm (default is to keep only best fit)
    > res <- nmf(V, 3, nrun=3)
    # NOTE - CRAN check detected: limiting maximum number of cores [2/16]
    Error in big.matrix(nrow = nrow(x), ncol = ncol(x), type = type, init = NULL, :
     Error: memory could not be allocated for instance of type big.matrix
    Calls: nmf ... gVariable -> <Anonymous> -> <Anonymous> -> big.matrix
    Timing stopped at: 0.039 0.066 0.587
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.23.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘doMPI’
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64