CRAN Package Check Results for Package dChipIO

Last updated on 2024-03-28 15:49:45 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.5 1.71 24.81 26.52 OK
r-devel-linux-x86_64-debian-gcc 0.1.5 1.53 19.22 20.75 OK
r-devel-linux-x86_64-fedora-clang 0.1.5 34.14 OK
r-devel-linux-x86_64-fedora-gcc 0.1.5 35.06 OK
r-devel-windows-x86_64 0.1.5 3.00 210.00 213.00 ERROR
r-patched-linux-x86_64 0.1.5 1.88 24.13 26.01 OK
r-release-linux-x86_64 0.1.5 1.99 23.62 25.61 OK
r-release-macos-arm64 0.1.5 17.00 OK
r-release-macos-x86_64 0.1.5 21.00 OK
r-release-windows-x86_64 0.1.5 4.00 39.00 43.00 OK
r-oldrel-macos-arm64 0.1.5 16.00 OK
r-oldrel-windows-x86_64 0.1.5 7.00 43.00 50.00 OK

Check Details

Version: 0.1.5
Check: tests
Result: ERROR Running 'readCdfBin.R' [172s] Running 'readDcp.R' [0s] Running 'readDcpRectangle.R' [1s] Running the tests in 'tests/readCdfBin.R' failed. Complete output: > library("dChipIO") dChipIO v0.1.5 (2016-01-12) successfully loaded. See ?dChipIO for help. > > path <- system.file("exData", package="dChipIO") > chipType <- "Test3" > filename <- sprintf("%s.CDF.bin", chipType) > pathname <- file.path(path, filename) > > hdr <- readCdfBinHeader(pathname) > print(hdr) $FileName [1] "C:\\Documents and Settings\\hb\\braju.com.R\\aroma.affymetrix\\reengineeringdChip\\annotationData\\Test3.CDF.bin" $Format [1] 4 $ChipType [1] "Test3" $CellDim [1] 126 $NumUnit [1] 345 > > data <- readCdfBin(pathname) > str(data) List of 4 $ header :List of 5 ..$ FileName: chr "C:\\Documents and Settings\\hb\\braju.com.R\\aroma.affymetrix\\reengineeringdChip\\annotationData\\Test3.CDF.bin" ..$ Format : int 4 ..$ ChipType: chr "Test3" ..$ CellDim : int 126 ..$ NumUnit : int 345 $ unitNames: chr [1:345] "Pae_16SrRNA_s_at" "Pae_23SrRNA_s_at" "PA1178_oprH_at" "PA1816_dnaQ_at" ... $ numProbes: int [1:345] 32 32 24 24 24 24 24 32 32 24 ... $ CellPos : int [1:345] 0 0 0 0 0 0 0 0 0 0 ... > > # Read a subset of the units > units <- c(10:11, 15:20, 150:105, 2,2,2) > dataT <- readCdfBin(pathname, units=units) > str(dataT) List of 4 $ header :List of 5 ..$ FileName: chr "C:\\Documents and Settings\\hb\\braju.com.R\\aroma.affymetrix\\reengineeringdChip\\annotationData\\Test3.CDF.bin" ..$ Format : int 4 ..$ ChipType: chr "Test3" ..$ CellDim : int 126 ..$ NumUnit : int 345 $ unitNames: chr [1:57] "PA1178_oprH_st" "PA1816_dnaQ_st" "AFFX-Athal-Actin_5_r_at" "AFFX-Athal-Actin_M_at" ... $ numProbes: int [1:57] 24 24 32 32 32 32 32 32 32 32 ... $ CellPos : int [1:57] 0 0 0 0 0 0 0 0 0 0 ... > > # Assert correctness > for (ff in c("unitNames", "numProbes", "CellPos")) { + stopifnot(length(dataT[[ff]]) == length(units)) + stopifnot(identical(dataT[[ff]], data[[ff]][units])) + } > > proc.time() user system elapsed 0.26 0.06 0.31 Flavor: r-devel-windows-x86_64