CRAN Package Check Results for Package glmmTMB

Last updated on 2021-06-20 12:50:10 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2.1 167.14 464.00 631.14 WARN
r-devel-linux-x86_64-debian-gcc 1.0.2.1 149.68 379.92 529.60 WARN
r-devel-linux-x86_64-fedora-clang 1.0.2.1 808.33 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.2.1 844.90 WARN
r-devel-windows-x86_64 1.0.2.1 168.00 338.00 506.00 NOTE --no-vignettes
r-devel-windows-x86_64-gcc10-UCRT 1.0.2.1 WARN
r-patched-linux-x86_64 1.0.2.1 164.96 479.37 644.33 WARN
r-patched-solaris-x86 1.0.2.1 1156.10 WARN
r-release-linux-x86_64 1.0.2.1 153.07 476.40 629.47 WARN
r-release-macos-arm64 1.0.2.1 NOTE
r-release-macos-x86_64 1.0.2.1 NOTE
r-release-windows-ix86+x86_64 1.0.2.1 319.00 485.00 804.00 NOTE --no-vignettes
r-oldrel-macos-x86_64 1.0.2.1 NOTE
r-oldrel-windows-ix86+x86_64 1.0.2.1 223.00 652.00 875.00 NOTE --no-vignettes

Check Details

Version: 1.0.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'covstruct.rmd' using rmarkdown
    --- finished re-building 'covstruct.rmd'
    
    --- re-building 'mcmc.rmd' using rmarkdown
    --- finished re-building 'mcmc.rmd'
    
    --- re-building 'miscEx.rmd' using rmarkdown
    --- finished re-building 'miscEx.rmd'
    
    --- re-building 'parallel.Rmd' using rmarkdown
    --- finished re-building 'parallel.Rmd'
    
    --- re-building 'sim.rmd' using rmarkdown
    --- finished re-building 'sim.rmd'
    
    --- re-building 'troubleshooting.rmd' using rmarkdown
    --- finished re-building 'troubleshooting.rmd'
    
    --- re-building 'glmmTMB.Rnw' using knitr
    Loading required package: stats4
    Warning in qt((1 - level)/2, df) : NaNs produced
    Warning in max(ids, na.rm = TRUE) :
     no non-missing arguments to max; returning -Inf
    --- finished re-building 'glmmTMB.Rnw'
    
    --- re-building 'model_evaluation.Rnw' using knitr
    Loading required package: carData
    lattice theme set by effectsTheme()
    See ?effectsTheme for details.
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    This is DHARMa 0.4.1. For overview type '?DHARMa'. For recent changes, type news(package = 'DHARMa') Note: Syntax of plotResiduals has changed in 0.3.0, see ?plotResiduals for details
    Loading required package: ggplot2
    Version: 1.37.5
    Date: 2020-06-17
    Author: Philip Leifeld (University of Essex)
    
    Consider submitting praise using the praise or praise_interactive functions.
    Please cite the JSS article in your publications -- see citation("texreg").
    Quitting from lines 270-280 (model_evaluation.Rnw)
    Error: processing vignette 'model_evaluation.Rnw' failed with diagnostics:
    Please add a variable named 'model' to distinguish different models
    --- failed re-building 'model_evaluation.Rnw'
    
    SUMMARY: processing the following file failed:
     'model_evaluation.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.2.1
Check: installed package size
Result: NOTE
     installed size is 45.2Mb
     sub-directories of 1Mb or more:
     doc 1.2Mb
     libs 41.5Mb
     test_data 1.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.0.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘covstruct.rmd’ using rmarkdown
    --- finished re-building ‘covstruct.rmd’
    
    --- re-building ‘mcmc.rmd’ using rmarkdown
    --- finished re-building ‘mcmc.rmd’
    
    --- re-building ‘miscEx.rmd’ using rmarkdown
    --- finished re-building ‘miscEx.rmd’
    
    --- re-building ‘parallel.Rmd’ using rmarkdown
    --- finished re-building ‘parallel.Rmd’
    
    --- re-building ‘sim.rmd’ using rmarkdown
    --- finished re-building ‘sim.rmd’
    
    --- re-building ‘troubleshooting.rmd’ using rmarkdown
    --- finished re-building ‘troubleshooting.rmd’
    
    --- re-building ‘glmmTMB.Rnw’ using knitr
    Loading required package: stats4
    Warning in qt((1 - level)/2, df) : NaNs produced
    Warning in max(ids, na.rm = TRUE) :
     no non-missing arguments to max; returning -Inf
    --- finished re-building ‘glmmTMB.Rnw’
    
    --- re-building ‘model_evaluation.Rnw’ using knitr
    Loading required package: carData
    lattice theme set by effectsTheme()
    See ?effectsTheme for details.
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    This is DHARMa 0.4.1. For overview type '?DHARMa'. For recent changes, type news(package = 'DHARMa') Note: Syntax of plotResiduals has changed in 0.3.0, see ?plotResiduals for details
    Loading required package: ggplot2
    Version: 1.37.5
    Date: 2020-06-17
    Author: Philip Leifeld (University of Essex)
    
    Consider submitting praise using the praise or praise_interactive functions.
    Please cite the JSS article in your publications -- see citation("texreg").
    Quitting from lines 270-280 (model_evaluation.Rnw)
    Error: processing vignette 'model_evaluation.Rnw' failed with diagnostics:
    Please add a variable named 'model' to distinguish different models
    --- failed re-building ‘model_evaluation.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘model_evaluation.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.2.1
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 17.2Mb
     sub-directories of 1Mb or more:
     doc 1.2Mb
     libs 13.5Mb
     test_data 1.2Mb
Flavors: r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.2.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'car', 'texreg'
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2.1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: 'car'
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'covstruct.rmd' using rmarkdown
    --- finished re-building 'covstruct.rmd'
    
    --- re-building 'mcmc.rmd' using rmarkdown
    --- finished re-building 'mcmc.rmd'
    
    --- re-building 'miscEx.rmd' using rmarkdown
    --- finished re-building 'miscEx.rmd'
    
    --- re-building 'parallel.Rmd' using rmarkdown
    --- finished re-building 'parallel.Rmd'
    
    --- re-building 'sim.rmd' using rmarkdown
    --- finished re-building 'sim.rmd'
    
    --- re-building 'troubleshooting.rmd' using rmarkdown
    --- finished re-building 'troubleshooting.rmd'
    
    --- re-building 'glmmTMB.Rnw' using knitr
    Loading required package: stats4
    Warning in qt((1 - level)/2, df) : NaNs produced
    Warning in max(ids, na.rm = TRUE) :
     no non-missing arguments to max; returning -Inf
    --- finished re-building 'glmmTMB.Rnw'
    
    --- re-building 'model_evaluation.Rnw' using knitr
    Quitting from lines 95-113 (model_evaluation.Rnw)
    Error: processing vignette 'model_evaluation.Rnw' failed with diagnostics:
    there is no package called 'car'
    --- failed re-building 'model_evaluation.Rnw'
    
    SUMMARY: processing the following file failed:
     'model_evaluation.Rnw'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 1.0.2.1
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘covstruct.rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘covstruct.rmd’
    
    --- re-building ‘mcmc.rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘mcmc.rmd’
    
    --- re-building ‘miscEx.rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘miscEx.rmd’
    
    --- re-building ‘parallel.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘parallel.Rmd’
    
    --- re-building ‘sim.rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘sim.rmd’
    
    --- re-building ‘troubleshooting.rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
    --- finished re-building ‘troubleshooting.rmd’
    
    --- re-building ‘glmmTMB.Rnw’ using knitr
    Loading required package: stats4
    Warning in qt((1 - level)/2, df) : NaNs produced
    Warning in max(ids, na.rm = TRUE) :
     no non-missing arguments to max; returning -Inf
    --- finished re-building ‘glmmTMB.Rnw’
    
    --- re-building ‘model_evaluation.Rnw’ using knitr
    Loading required package: carData
    lattice theme set by effectsTheme()
    See ?effectsTheme for details.
    Loading required package: mvtnorm
    Loading required package: survival
    Loading required package: TH.data
    Loading required package: MASS
    
    Attaching package: 'TH.data'
    
    The following object is masked from 'package:MASS':
    
     geyser
    
    This is DHARMa 0.4.1. For overview type '?DHARMa'. For recent changes, type news(package = 'DHARMa') Note: Syntax of plotResiduals has changed in 0.3.0, see ?plotResiduals for details
    Loading required package: ggplot2
    Version: 1.37.5
    Date: 2020-06-17
    Author: Philip Leifeld (University of Essex)
    
    Consider submitting praise using the praise or praise_interactive functions.
    Please cite the JSS article in your publications -- see citation("texreg").
    Quitting from lines 270-280 (model_evaluation.Rnw)
    Error: processing vignette 'model_evaluation.Rnw' failed with diagnostics:
    Please add a variable named 'model' to distinguish different models
    --- failed re-building ‘model_evaluation.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘model_evaluation.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86