Last updated on 2024-08-17 08:49:20 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.4 | 7.85 | 101.28 | 109.13 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3.4 | 5.35 | 73.73 | 79.08 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3.4 | 172.97 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.4 | 179.21 | NOTE | |||
| r-devel-windows-x86_64 | 0.3.4 | 10.00 | 0.00 | 10.00 | FAIL | |
| r-patched-linux-x86_64 | 0.3.4 | 8.70 | 96.52 | 105.22 | NOTE | |
| r-release-linux-x86_64 | 0.3.4 | 7.99 | 95.37 | 103.36 | NOTE | |
| r-release-macos-arm64 | 0.3.4 | 73.00 | NOTE | |||
| r-release-macos-x86_64 | 0.3.4 | 105.00 | NOTE | |||
| r-release-windows-x86_64 | 0.3.4 | 10.00 | 157.00 | 167.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.3.4 | 77.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.3.4 | 74.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.3.4 | 12.00 | 171.00 | 183.00 | OK |
Version: 0.3.4
Check: Rd files
Result: NOTE
checkRd: (-1) check_hwe.Rd:103: Lost braces; missing escapes or markup?
103 | {'ALL', 'AFF', 'UNAFF', 'ALL(QT)', 'ALL(NP)'}), A1 (Allele 1; usually minor),
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 0.3.4
Check: re-building of vignette outputs
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> # the following code is not run on package build, as the path2plink on the
> # user system is not known.
> ## Not run:
> ##D # simple sexcheck on all individuals in dataset
> ##D run <- run_check_sex(indir=indir, qcdir=qcdir, name=name)
> ##D
> ##D # sexcheck on subset of dataset
> ##D keep_individuals_file <- system.file("extdata", "keep_individuals",
> ##D package="plinkQC")
> ##D run <- run_check_sex(indir=indir, qcdir=qcdir, name=name,
> ##D keep_individuals=keep_individuals_file, path2plink=path2plink)
> ## End(Not run)
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 2.16 0.2 2.35 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64