CRAN Package Check Results for Package polyPK

Last updated on 2021-12-02 16:52:06 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1.0 29.49 266.31 295.80 WARN
r-devel-linux-x86_64-debian-gcc 3.1.0 27.01 204.64 231.65 WARN
r-devel-linux-x86_64-fedora-clang 3.1.0 434.17 NOTE
r-devel-linux-x86_64-fedora-gcc 3.1.0 436.50 NOTE
r-devel-windows-x86_64-new-UL 3.1.0 52.00 321.00 373.00 WARN
r-devel-windows-x86_64-new-TK 3.1.0 WARN
r-devel-windows-x86_64-old 3.1.0 44.00 197.00 241.00 WARN
r-patched-linux-x86_64 3.1.0 28.75 295.53 324.28 NOTE
r-patched-solaris-x86 3.1.0 422.30 NOTE
r-release-linux-x86_64 3.1.0 31.42 300.55 331.97 NOTE
r-release-macos-arm64 3.1.0 OK
r-release-macos-x86_64 3.1.0 OK
r-release-windows-ix86+x86_64 3.1.0 63.00 281.00 344.00 OK
r-oldrel-macos-x86_64 3.1.0 OK
r-oldrel-windows-ix86+x86_64 3.1.0 62.00 279.00 341.00 OK

Check Details

Version: 3.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'my-vignette.Rmd' using rmarkdown
    Loading required package: impute
    Loading required package: pcaMethods
    Loading required package: Biobase
    Loading required package: BiocGenerics
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which.max, which.min
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Loading required package: xlsx
    Quitting from lines 47-55 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    non-numeric matrix extent
    --- failed re-building 'my-vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'my-vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 3.1.0
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'AbsorbedDrugMetabolites' 'CorrelationResults'
     'EndogenousMetabolites' 'HeatMap' 'PKresults'
     'SecondAbsorbedMetabolites' 'preprocessed-data'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 3.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'my-vignette.Rmd' using rmarkdown
    Loading required package: impute
    Loading required package: pcaMethods
    Loading required package: Biobase
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:parallel':
    
     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
     clusterExport, clusterMap, parApply, parCapply, parLapply,
     parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which.max, which.min
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Loading required package: xlsx
    Quitting from lines 47-55 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    non-numeric matrix extent
    --- failed re-building 'my-vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'my-vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-old

Version: 3.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'my-vignette.Rmd' using rmarkdown
    Loading required package: impute
    Loading required package: pcaMethods
    Loading required package: Biobase
    Loading required package: BiocGenerics
    
    Attaching package: 'BiocGenerics'
    
    The following objects are masked from 'package:stats':
    
     IQR, mad, sd, var, xtabs
    
    The following objects are masked from 'package:base':
    
     Filter, Find, Map, Position, Reduce, anyDuplicated, append,
     as.data.frame, basename, cbind, colnames, dirname, do.call,
     duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
     lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
     pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
     tapply, union, unique, unsplit, which.max, which.min
    
    Welcome to Bioconductor
    
     Vignettes contain introductory material; view with
     'browseVignettes()'. To cite Bioconductor, see
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: 'pcaMethods'
    
    The following object is masked from 'package:stats':
    
     loadings
    
    Loading required package: xlsx
    Quitting from lines 47-55 (my-vignette.Rmd)
    Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
    non-numeric matrix extent
    --- failed re-building 'my-vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'my-vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-new-TK