CRAN Package Check Results for Package poppr

Last updated on 2024-07-15 16:56:30 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.9.6 37.79 273.25 311.04 OK
r-devel-linux-x86_64-debian-gcc 2.9.6 28.35 197.74 226.09 OK
r-devel-linux-x86_64-fedora-clang 2.9.6 377.32 OK
r-devel-linux-x86_64-fedora-gcc 2.9.6 376.17 OK
r-devel-windows-x86_64 2.9.6 38.00 249.00 287.00 NOTE
r-patched-linux-x86_64 2.9.6 47.24 258.52 305.76 OK
r-release-linux-x86_64 2.9.6 28.72 257.36 286.08 OK
r-release-macos-arm64 2.9.6 97.00 OK
r-release-macos-x86_64 2.9.6 155.00 WARN
r-release-windows-x86_64 2.9.6 35.00 247.00 282.00 OK
r-oldrel-macos-arm64 2.9.6 110.00 OK
r-oldrel-macos-x86_64 2.9.6 215.00 OK
r-oldrel-windows-x86_64 2.9.6 47.00 297.00 344.00 OK

Check Details

Version: 2.9.6
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: MLG-accessors.Rd: genlight-class aboot.Rd: genind, genpop, genlight-class bitwise.dist.Rd: genlight-class, genind-class bitwise.ia.Rd: genlight-class bootgen-class.Rd: gen-class bruvo.boot.Rd: genind, boot.phylo, nancycats, nj, nodelabels, tab bruvo.dist.Rd: genind bruvo.msn.Rd: genind, nancycats bruvomat-methods.Rd: genind-class clonecorrect.Rd: genind-class coercion-methods.Rd: genind-class, splitStrata diss.dist.Rd: genind diversity_ci.Rd: genind filter_stats.Rd: genind, genlight fix_replen.Rd: genind genclone-class.Rd: genind-class, genlight-class genclone-method.Rd: genind-class genetic_distance.Rd: genind-class, dist.genpop genind2genalex.Rd: genind-class genotype_curve.Rd: genind-class ia.Rd: import2genind info_table.Rd: genind-class informloci.Rd: genind-class is.clone.Rd: genind-class, genlight-class missingno.Rd: genind-class, tab mlg.Rd: ggplot mlg.filter.Rd: genind-class pgen.Rd: strata plot_poppr_msn.Rd: genind-class, genlight-class poppr-package.Rd: genind-class, genlight-class poppr.Rd: tab, strata, last_plot poppr.amova.Rd: genind-class, genlight-class, strata, quasieuclid, lingoes, cailliez poppr.msn.Rd: genind, genlight, nancycats, nj, nodelabels, tab popsub.Rd: genind-class, genlight-class psex.Rd: strata read.genalex.Rd: genind, other, genind-class recode_polyploids.Rd: genind-class, genpop-class rraf.Rd: strata shufflepop.Rd: genind-class snpclone-coercion-methods.Rd: genlight-class snpclone-method.Rd: genlight-class test_replen.Rd: genind upgma.Rd: as.phylo win.ia.Rd: genlight-class Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavor: r-devel-windows-x86_64

Version: 2.9.6
Check: re-building of vignette outputs
Result: WARN Error(s) in re-building vignettes: ... --- re-building ‘algo.Rnw’ using knitr Error: processing vignette 'algo.Rnw' failed with diagnostics: Running 'texi2dvi' on 'algo.tex' failed. LaTeX errors: ! Undefined control sequence. l.548 \hlkwd{library}\hldef {(}\hlsng{"poppr"}\hldef{)} ? ! Emergency stop. ! Emergency stop. l.548 End of file on the terminal! ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘algo.Rnw’ SUMMARY: processing the following file failed: ‘algo.Rnw’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-x86_64