Last updated on 2024-08-13 17:48:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.2 | 8.56 | 158.71 | 167.27 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.2 | 6.14 | 110.05 | 116.19 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.2 | 274.43 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.2 | 400.71 | OK | |||
| r-devel-windows-x86_64 | 1.3.2 | 14.00 | 170.00 | 184.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.2 | 16.15 | 151.94 | 168.09 | ERROR | |
| r-release-linux-x86_64 | 1.3.2 | 9.21 | 152.51 | 161.72 | ERROR | |
| r-release-macos-arm64 | 1.3.2 | 105.00 | OK | |||
| r-release-macos-x86_64 | 1.3.2 | 162.00 | OK | |||
| r-release-windows-x86_64 | 1.3.2 | 14.00 | 166.00 | 180.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.3.2 | 97.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.2 | 217.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.3.2 | 18.00 | 212.00 | 230.00 | ERROR |
Version: 1.3.2
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
bar_error.Rd: gf_summary
bland_altman.Rd: gf_point
box_plot.Rd: gf_boxplot
gf_star.Rd: gf_text
hist_norm.Rd: gf_dhistogram
mhor.Rd: mh
qq_plot.Rd: gf_qq, gf_line
strip_error.Rd: gf_point, gf_jitter
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Vanderpump 4.507 0.004 5.818
Bernard 4.311 0.172 5.941
Rothman 4.245 0.047 5.421
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11507 bytes
Input file size = 11597 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9715
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9715
Output IDAT size = 9715 bytes (1792 bytes decrease)
Output file size = 9793 bytes (1804 bytes = 15.56% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12084 bytes
Input file size = 12174 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10048
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10048
Output IDAT size = 10048 bytes (2036 bytes decrease)
Output file size = 10126 bytes (2048 bytes = 16.82% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10075 bytes
Input file size = 10165 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9095
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8982
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8982
Output IDAT size = 8982 bytes (1093 bytes decrease)
Output file size = 9060 bytes (1105 bytes = 10.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10338 bytes
Input file size = 10428 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9242
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9229
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9229
Output IDAT size = 9229 bytes (1109 bytes decrease)
Output file size = 9307 bytes (1121 bytes = 10.75% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12791 bytes
Input file size = 12881 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10832
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10832
Output IDAT size = 10832 bytes (1959 bytes decrease)
Output file size = 10910 bytes (1971 bytes = 15.30% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13752 bytes
Input file size = 13842 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11701
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11701
Output IDAT size = 11701 bytes (2051 bytes decrease)
Output file size = 11779 bytes (2063 bytes = 14.90% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15195 bytes
Input file size = 15285 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11845
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11845
Output IDAT size = 11845 bytes (3350 bytes decrease)
Output file size = 11923 bytes (3362 bytes = 22.00% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11571 bytes
Input file size = 11661 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9698
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9698
Output IDAT size = 9698 bytes (1873 bytes decrease)
Output file size = 9776 bytes (1885 bytes = 16.16% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12036 bytes
Input file size = 12126 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10021
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10021
Output IDAT size = 10021 bytes (2015 bytes decrease)
Output file size = 10099 bytes (2027 bytes = 16.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10058 bytes
Input file size = 10148 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9185
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8939
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8939
Output IDAT size = 8939 bytes (1119 bytes decrease)
Output file size = 9017 bytes (1131 bytes = 11.15% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10380 bytes
Input file size = 10470 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9254
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9254
Output IDAT size = 9254 bytes (1126 bytes decrease)
Output file size = 9332 bytes (1138 bytes = 10.87% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12970 bytes
Input file size = 13060 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11100
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11100
Output IDAT size = 11100 bytes (1870 bytes decrease)
Output file size = 11178 bytes (1882 bytes = 14.41% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13773 bytes
Input file size = 13863 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11677
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11677
Output IDAT size = 11677 bytes (2096 bytes decrease)
Output file size = 11755 bytes (2108 bytes = 15.21% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15335 bytes
Input file size = 15425 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11889
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11889
Output IDAT size = 11889 bytes (3446 bytes decrease)
Output file size = 11967 bytes (3458 bytes = 22.42% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.2
Check: examples
Result: ERROR
Running examples in ‘pubh-Ex.R’ failed
The error most likely occurred in:
> ### Name: cosm_reg
> ### Title: Cosmetics for tables of regression coefficients. Converts tables
> ### generated by 'tbl_regression' to 'huxtable' and adds some cosmetics.
> ### Aliases: cosm_reg
>
> ### ** Examples
>
> require(sjlabelled, quietly = TRUE)
Attaching package: ‘sjlabelled’
The following object is masked from ‘package:huxtable’:
set_label
The following object is masked from ‘package:ggplot2’:
as_label
>
> data(diet, package = "Epi")
> diet <- diet %>%
+ var_labels(
+ chd = "Coronary Heart Disease",
+ fibre = "Fibre intake (g/day)"
+ )
>
> model_binom <- glm(chd ~ fibre, data = diet, family = binomial)
>
> model_binom %>%
+ tbl_regression(exponentiate = TRUE) %>%
+ cosm_reg(bold = TRUE) %>%
+ theme_pubh(1) %>%
+ add_footnote(get_r2(model_binom), font_size = 9)
Error in gtsummary::modify_footnote(., everything() ~ NA, abbreviation = TRUE) :
The package "broom.helpers" (>= 1.15.0) is required.
Calls: %>% ... <Anonymous> -> tbl_regression -> check_pkg_installed
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11420 bytes
Input file size = 11510 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9657
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9657
Output IDAT size = 9657 bytes (1763 bytes decrease)
Output file size = 9735 bytes (1775 bytes = 15.42% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12006 bytes
Input file size = 12096 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9999
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9999
Output IDAT size = 9999 bytes (2007 bytes decrease)
Output file size = 10077 bytes (2019 bytes = 16.69% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10179 bytes
Input file size = 10269 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9142
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9073
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9073
Output IDAT size = 9073 bytes (1106 bytes decrease)
Output file size = 9151 bytes (1118 bytes = 10.89% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10334 bytes
Input file size = 10424 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9246
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9232
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9232
Output IDAT size = 9232 bytes (1102 bytes decrease)
Output file size = 9310 bytes (1114 bytes = 10.69% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13075 bytes
Input file size = 13165 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11232
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11232
Output IDAT size = 11232 bytes (1843 bytes decrease)
Output file size = 11310 bytes (1855 bytes = 14.09% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13792 bytes
Input file size = 13882 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11754
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11754
Output IDAT size = 11754 bytes (2038 bytes decrease)
Output file size = 11832 bytes (2050 bytes = 14.77% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15327 bytes
Input file size = 15417 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11919
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11919
Output IDAT size = 11919 bytes (3408 bytes decrease)
Output file size = 11997 bytes (3420 bytes = 22.18% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'introduction.Rmd' using rmarkdown
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building 'introduction.Rmd'
--- re-building 'regression.Rmd' using rmarkdown
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building 'regression.Rmd'
SUMMARY: processing the following files failed:
'introduction.Rmd' 'regression.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11364 bytes
Input file size = 11454 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9614
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9614
Output IDAT size = 9614 bytes (1750 bytes decrease)
Output file size = 9692 bytes (1762 bytes = 15.38% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12074 bytes
Input file size = 12164 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10033
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10033
Output IDAT size = 10033 bytes (2041 bytes decrease)
Output file size = 10111 bytes (2053 bytes = 16.88% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10054 bytes
Input file size = 10144 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9162
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8953
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 8953
Output IDAT size = 8953 bytes (1101 bytes decrease)
Output file size = 9031 bytes (1113 bytes = 10.97% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10322 bytes
Input file size = 10412 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9241
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9209
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9209
Output IDAT size = 9209 bytes (1113 bytes decrease)
Output file size = 9287 bytes (1125 bytes = 10.80% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13012 bytes
Input file size = 13102 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11155
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11155
Output IDAT size = 11155 bytes (1857 bytes decrease)
Output file size = 11233 bytes (1869 bytes = 14.26% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13709 bytes
Input file size = 13799 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11663
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11663
Output IDAT size = 11663 bytes (2046 bytes decrease)
Output file size = 11741 bytes (2058 bytes = 14.91% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15279 bytes
Input file size = 15369 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11902
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11902
Output IDAT size = 11902 bytes (3377 bytes decrease)
Output file size = 11980 bytes (3389 bytes = 22.05% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-13-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 23111 bytes
Input file size = 23213 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18532
Output IDAT size = 18532 bytes (4579 bytes decrease)
Output file size = 18610 bytes (4603 bytes = 19.83% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-15-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11453 bytes
Input file size = 11543 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9618
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9618
Output IDAT size = 9618 bytes (1835 bytes decrease)
Output file size = 9696 bytes (1847 bytes = 16.00% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-16-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12055 bytes
Input file size = 12145 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10021
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10021
Output IDAT size = 10021 bytes (2034 bytes decrease)
Output file size = 10099 bytes (2046 bytes = 16.85% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-18-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10195 bytes
Input file size = 10285 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9202
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9090
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9090
Output IDAT size = 9090 bytes (1105 bytes decrease)
Output file size = 9168 bytes (1117 bytes = 10.86% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-19-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 26215 bytes
Input file size = 26329 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21199
Output IDAT size = 21199 bytes (5016 bytes decrease)
Output file size = 21277 bytes (5052 bytes = 19.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-21-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10334 bytes
Input file size = 10424 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9222
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 9222
Output IDAT size = 9222 bytes (1112 bytes decrease)
Output file size = 9300 bytes (1124 bytes = 10.78% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-22-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12914 bytes
Input file size = 13004 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11012
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11012
Output IDAT size = 11012 bytes (1902 bytes decrease)
Output file size = 11090 bytes (1914 bytes = 14.72% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-23-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13828 bytes
Input file size = 13918 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11851
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11851
Output IDAT size = 11851 bytes (1977 bytes decrease)
Output file size = 11929 bytes (1989 bytes = 14.29% decrease)
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/introduction_files/figure-html/unnamed-chunk-24-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15286 bytes
Input file size = 15376 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11872
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11872
Output IDAT size = 11872 bytes (3414 bytes decrease)
Output file size = 11950 bytes (3426 bytes = 22.28% decrease)
Quitting from lines 349-353 [unnamed-chunk-26] (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘introduction.Rmd’
--- re-building ‘regression.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/pubh.Rcheck/vign_test/pubh/vignettes/regression_files/figure-html/unnamed-chunk-3-1.png
480x384 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15368 bytes
Input file size = 15458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12425
Output IDAT size = 12425 bytes (2943 bytes decrease)
Output file size = 12503 bytes (2955 bytes = 19.12% decrease)
Quitting from lines 118-122 [unnamed-chunk-9] (regression.Rmd)
Error: processing vignette 'regression.Rmd' failed with diagnostics:
The package "broom.helpers" (>= 1.15.0) is required.
--- failed re-building ‘regression.Rmd’
SUMMARY: processing the following files failed:
‘introduction.Rmd’ ‘regression.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64