CRAN Package Check Results for Package santaR

Last updated on 2024-03-02 00:53:37 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.3 6.94 208.01 214.95 ERROR
r-devel-linux-x86_64-debian-gcc 1.2.3 5.51 159.51 165.02 ERROR
r-devel-linux-x86_64-fedora-clang 1.2.3 267.13 ERROR
r-devel-linux-x86_64-fedora-gcc 1.2.3 305.94 ERROR
r-devel-windows-x86_64 1.2.3 8.00 166.00 174.00 OK
r-patched-linux-x86_64 1.2.3 7.87 207.47 215.34 ERROR
r-release-linux-x86_64 1.2.3 4.77 208.00 212.77 ERROR
r-release-macos-arm64 1.2.3 92.00 OK
r-release-macos-x86_64 1.2.3 148.00 OK
r-release-windows-x86_64 1.2.3 12.00 206.00 218.00 ERROR
r-oldrel-macos-arm64 1.2.3 94.00 NOTE
r-oldrel-windows-x86_64 1.2.3 11.00 211.00 222.00 ERROR

Check Details

Version: 1.2.3
Check: Rd files
Result: NOTE checkRd: (-1) santaR_auto_summary.Rd:54: Lost braces; missing escapes or markup? 54 | A list: \code{result$pval.all} \code{data.frame} of \emph{p}-values, with all variables as rows and different \emph{p}-value corrections as columns. \code{result$pval.summary} \code{data.frame} of number of variables with a \emph{p}-value inferior to a cut-off. Different metric and {p}-value correction as rows, different cut-off (\emph{Inf 0.05}, \emph{Inf 0.01}, \emph{Inf 0.001}) as columns. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2.3
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.3
Check: tests
Result: ERROR Running ‘testthat.R’ [9s/22s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.3
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘DT’ ‘gridExtra’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-oldrel-macos-arm64

Version: 1.2.3
Check: tests
Result: ERROR Running ‘testthat.R’ [13s/23s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.3
Check: tests
Result: ERROR Running ‘testthat.R’ [14s/59s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.3
Check: tests
Result: ERROR Running ‘testthat.R’ [10s/17s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 1.2.3
Check: tests
Result: ERROR Running ‘testthat.R’ [11s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 681 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 1.2.3
Check: tests
Result: ERROR Running 'testthat.R' [17s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") spar-finding: non-finite value inf; using BIG value [ FAIL 8 | WARN 2 | SKIP 0 | PASS 686 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 686 ] Error: Test failures Execution halted Flavor: r-release-windows-x86_64

Version: 1.2.3
Check: tests
Result: ERROR Running 'testthat.R' [18s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(santaR) This is santaR version 1.2.3 > > test_check("santaR") spar-finding: non-finite value inf; using BIG value [ FAIL 8 | WARN 2 | SKIP 0 | PASS 686 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:30:3'): default values, change df ── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:45:3'): change nPC ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:61:3'): change step ────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:77:3'): no showPt ──────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-get_eigen_DFoverlay_list.R:92:3'): no autofit ─────── length(result_DFoverlay[[1]]) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:37:3'): default values ──────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:51:3'): different number of time-points per spline ── length(result_nbTPHisto_2) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 ── Failure ('test_dfSearch-plot_nbTP_histogram.R:69:3'): change dfCuttOff ────── length(result_nbTPHisto) not equal to 9. 1/1 mismatches [1] 11 - 9 == 2 [ FAIL 8 | WARN 2 | SKIP 0 | PASS 686 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64