CRAN Package Check Results for Package visualpred

Last updated on 2024-07-16 00:56:15 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 15.83 216.59 232.42 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.0 10.28 159.65 169.93 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.0 301.46 ERROR
r-devel-linux-x86_64-fedora-gcc 0.1.0 286.58 ERROR
r-devel-windows-x86_64 0.1.0 13.00 166.00 179.00 ERROR
r-patched-linux-x86_64 0.1.0 12.05 201.54 213.59 ERROR
r-release-linux-x86_64 0.1.0 14.42 208.33 222.75 ERROR
r-release-macos-arm64 0.1.0 82.00 OK
r-release-macos-x86_64 0.1.0 139.00 OK
r-release-windows-x86_64 0.1.0 14.00 164.00 178.00 ERROR
r-oldrel-macos-arm64 0.1.0 108.00 OK
r-oldrel-macos-x86_64 0.1.0 175.00 OK
r-oldrel-windows-x86_64 0.1.0 19.00 198.00 217.00 ERROR

Check Details

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Advanced.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59322 bytes Input file size = 59484 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 Output IDAT size = 49853 bytes (9469 bytes decrease) Output file size = 49931 bytes (9553 bytes = 16.06% decrease) ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60998 bytes Input file size = 61160 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 Output IDAT size = 50915 bytes (10083 bytes decrease) Output file size = 50993 bytes (10167 bytes = 16.62% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79380 bytes Input file size = 79566 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 Output IDAT size = 69373 bytes (10007 bytes decrease) Output file size = 69451 bytes (10115 bytes = 12.71% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85905 bytes Input file size = 86103 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 Output IDAT size = 74310 bytes (11595 bytes decrease) Output file size = 74388 bytes (11715 bytes = 13.61% decrease) ** Processing: figure/unnamed-chunk-5-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82133 bytes Input file size = 82331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 Output IDAT size = 79526 bytes (2607 bytes decrease) Output file size = 79604 bytes (2727 bytes = 3.31% decrease) ** Processing: figure/unnamed-chunk-5-3.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54780 bytes Input file size = 54930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 Output IDAT size = 48985 bytes (5795 bytes decrease) Output file size = 49063 bytes (5867 bytes = 10.68% decrease) ** Processing: figure/unnamed-chunk-5-4.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46664 bytes Input file size = 46802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 Output IDAT size = 44876 bytes (1788 bytes decrease) Output file size = 44954 bytes (1848 bytes = 3.95% decrease) --- finished re-building ‘Advanced.Rmd’ --- re-building ‘Basic_example.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55825 bytes Input file size = 55975 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 Output IDAT size = 46598 bytes (9227 bytes decrease) Output file size = 46676 bytes (9299 bytes = 16.61% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57771 bytes Input file size = 57933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 Output IDAT size = 48944 bytes (8827 bytes decrease) Output file size = 49022 bytes (8911 bytes = 15.38% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75568 bytes Input file size = 75754 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 Output IDAT size = 62169 bytes (13399 bytes decrease) Output file size = 62247 bytes (13507 bytes = 17.83% decrease) ** Processing: figure/unnamed-chunk-6-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76646 bytes Input file size = 76832 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 Output IDAT size = 63958 bytes (12688 bytes decrease) Output file size = 64036 bytes (12796 bytes = 16.65% decrease) ** Processing: figure/unnamed-chunk-7-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53035 bytes Input file size = 53185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 Output IDAT size = 45579 bytes (7456 bytes decrease) Output file size = 45657 bytes (7528 bytes = 14.15% decrease) ** Processing: figure/unnamed-chunk-8-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51673 bytes Input file size = 51823 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 Output IDAT size = 43346 bytes (8327 bytes decrease) Output file size = 43424 bytes (8399 bytes = 16.21% decrease) ** Processing: figure/unnamed-chunk-10-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115354 bytes Input file size = 115600 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 Output IDAT size = 98863 bytes (16491 bytes decrease) Output file size = 98941 bytes (16659 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-11-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 173509 bytes Input file size = 173839 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 Output IDAT size = 146962 bytes (26547 bytes decrease) Output file size = 147040 bytes (26799 bytes = 15.42% decrease) ** Processing: figure/unnamed-chunk-13-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 122185 bytes Input file size = 122431 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 Output IDAT size = 103793 bytes (18392 bytes decrease) Output file size = 103871 bytes (18560 bytes = 15.16% decrease) ** Processing: figure/unnamed-chunk-13-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 146262 bytes Input file size = 146544 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 Output IDAT size = 124615 bytes (21647 bytes decrease) Output file size = 124693 bytes (21851 bytes = 14.91% decrease) --- finished re-building ‘Basic_example.Rmd’ --- re-building ‘Comparing.Rmd’ using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building ‘Comparing.Rmd’ --- re-building ‘Outliers.Rmd’ using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-3-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 178087 bytes Input file size = 178417 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145732 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145732 Output IDAT size = 145732 bytes (32355 bytes decrease) Output file size = 145810 bytes (32607 bytes = 18.28% decrease) Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-4-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 156298 bytes Input file size = 156604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133899 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133899 Output IDAT size = 133899 bytes (22399 bytes decrease) Output file size = 133977 bytes (22627 bytes = 14.45% decrease) ** Processing: figure/unnamed-chunk-4-2.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 133252 bytes Input file size = 133522 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119423 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119423 Output IDAT size = 119423 bytes (13829 bytes decrease) Output file size = 119501 bytes (14021 bytes = 10.50% decrease) ** Processing: figure/unnamed-chunk-4-3.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124671 bytes Input file size = 124929 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107155 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107155 Output IDAT size = 107155 bytes (17516 bytes decrease) Output file size = 107233 bytes (17696 bytes = 14.16% decrease) --- finished re-building ‘Outliers.Rmd’ SUMMARY: processing the following file failed: ‘Comparing.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Advanced.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59322 bytes Input file size = 59484 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 Output IDAT size = 49853 bytes (9469 bytes decrease) Output file size = 49931 bytes (9553 bytes = 16.06% decrease) ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60998 bytes Input file size = 61160 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 Output IDAT size = 50915 bytes (10083 bytes decrease) Output file size = 50993 bytes (10167 bytes = 16.62% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79380 bytes Input file size = 79566 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 Output IDAT size = 69373 bytes (10007 bytes decrease) Output file size = 69451 bytes (10115 bytes = 12.71% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85905 bytes Input file size = 86103 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 Output IDAT size = 74310 bytes (11595 bytes decrease) Output file size = 74388 bytes (11715 bytes = 13.61% decrease) ** Processing: figure/unnamed-chunk-5-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82133 bytes Input file size = 82331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 Output IDAT size = 79526 bytes (2607 bytes decrease) Output file size = 79604 bytes (2727 bytes = 3.31% decrease) ** Processing: figure/unnamed-chunk-5-3.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54780 bytes Input file size = 54930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 Output IDAT size = 48985 bytes (5795 bytes decrease) Output file size = 49063 bytes (5867 bytes = 10.68% decrease) ** Processing: figure/unnamed-chunk-5-4.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46664 bytes Input file size = 46802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 Output IDAT size = 44876 bytes (1788 bytes decrease) Output file size = 44954 bytes (1848 bytes = 3.95% decrease) --- finished re-building ‘Advanced.Rmd’ --- re-building ‘Basic_example.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55825 bytes Input file size = 55975 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 Output IDAT size = 46598 bytes (9227 bytes decrease) Output file size = 46676 bytes (9299 bytes = 16.61% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57771 bytes Input file size = 57933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 Output IDAT size = 48944 bytes (8827 bytes decrease) Output file size = 49022 bytes (8911 bytes = 15.38% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75568 bytes Input file size = 75754 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 Output IDAT size = 62169 bytes (13399 bytes decrease) Output file size = 62247 bytes (13507 bytes = 17.83% decrease) ** Processing: figure/unnamed-chunk-6-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76646 bytes Input file size = 76832 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 Output IDAT size = 63958 bytes (12688 bytes decrease) Output file size = 64036 bytes (12796 bytes = 16.65% decrease) ** Processing: figure/unnamed-chunk-7-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53035 bytes Input file size = 53185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 Output IDAT size = 45579 bytes (7456 bytes decrease) Output file size = 45657 bytes (7528 bytes = 14.15% decrease) ** Processing: figure/unnamed-chunk-8-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51530 bytes Input file size = 51680 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43381 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43381 Output IDAT size = 43381 bytes (8149 bytes decrease) Output file size = 43459 bytes (8221 bytes = 15.91% decrease) ** Processing: figure/unnamed-chunk-10-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115354 bytes Input file size = 115600 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 Output IDAT size = 98863 bytes (16491 bytes decrease) Output file size = 98941 bytes (16659 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-11-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 173509 bytes Input file size = 173839 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 Output IDAT size = 146962 bytes (26547 bytes decrease) Output file size = 147040 bytes (26799 bytes = 15.42% decrease) ** Processing: figure/unnamed-chunk-13-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 122185 bytes Input file size = 122431 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 Output IDAT size = 103793 bytes (18392 bytes decrease) Output file size = 103871 bytes (18560 bytes = 15.16% decrease) ** Processing: figure/unnamed-chunk-13-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 146262 bytes Input file size = 146544 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 Output IDAT size = 124615 bytes (21647 bytes decrease) Output file size = 124693 bytes (21851 bytes = 14.91% decrease) --- finished re-building ‘Basic_example.Rmd’ --- re-building ‘Comparing.Rmd’ using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building ‘Comparing.Rmd’ --- re-building ‘Outliers.Rmd’ using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-3-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 177918 bytes Input file size = 178248 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145588 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145588 Output IDAT size = 145588 bytes (32330 bytes decrease) Output file size = 145666 bytes (32582 bytes = 18.28% decrease) Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-4-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 156244 bytes Input file size = 156550 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133888 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133888 Output IDAT size = 133888 bytes (22356 bytes decrease) Output file size = 133966 bytes (22584 bytes = 14.43% decrease) ** Processing: figure/unnamed-chunk-4-2.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 133173 bytes Input file size = 133443 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119339 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119339 Output IDAT size = 119339 bytes (13834 bytes decrease) Output file size = 119417 bytes (14026 bytes = 10.51% decrease) ** Processing: figure/unnamed-chunk-4-3.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124653 bytes Input file size = 124911 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107154 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107154 Output IDAT size = 107154 bytes (17499 bytes decrease) Output file size = 107232 bytes (17679 bytes = 14.15% decrease) --- finished re-building ‘Outliers.Rmd’ SUMMARY: processing the following file failed: ‘Comparing.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Advanced.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59332 bytes Input file size = 59494 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854 Output IDAT size = 49854 bytes (9478 bytes decrease) Output file size = 49932 bytes (9562 bytes = 16.07% decrease) ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 61005 bytes Input file size = 61167 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50924 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50924 Output IDAT size = 50924 bytes (10081 bytes decrease) Output file size = 51002 bytes (10165 bytes = 16.62% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79376 bytes Input file size = 79562 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69383 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69383 Output IDAT size = 69383 bytes (9993 bytes decrease) Output file size = 69461 bytes (10101 bytes = 12.70% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85904 bytes Input file size = 86102 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 Output IDAT size = 74310 bytes (11594 bytes decrease) Output file size = 74388 bytes (11714 bytes = 13.60% decrease) ** Processing: figure/unnamed-chunk-5-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82133 bytes Input file size = 82331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 Output IDAT size = 79526 bytes (2607 bytes decrease) Output file size = 79604 bytes (2727 bytes = 3.31% decrease) ** Processing: figure/unnamed-chunk-5-3.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54778 bytes Input file size = 54928 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48981 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48981 Output IDAT size = 48981 bytes (5797 bytes decrease) Output file size = 49059 bytes (5869 bytes = 10.68% decrease) ** Processing: figure/unnamed-chunk-5-4.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46664 bytes Input file size = 46802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 Output IDAT size = 44876 bytes (1788 bytes decrease) Output file size = 44954 bytes (1848 bytes = 3.95% decrease) --- finished re-building ‘Advanced.Rmd’ --- re-building ‘Basic_example.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55830 bytes Input file size = 55980 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46602 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46602 Output IDAT size = 46602 bytes (9228 bytes decrease) Output file size = 46680 bytes (9300 bytes = 16.61% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57771 bytes Input file size = 57933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48942 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48942 Output IDAT size = 48942 bytes (8829 bytes decrease) Output file size = 49020 bytes (8913 bytes = 15.39% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75564 bytes Input file size = 75750 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62174 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62174 Output IDAT size = 62174 bytes (13390 bytes decrease) Output file size = 62252 bytes (13498 bytes = 17.82% decrease) ** Processing: figure/unnamed-chunk-6-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76646 bytes Input file size = 76832 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957 Output IDAT size = 63957 bytes (12689 bytes decrease) Output file size = 64035 bytes (12797 bytes = 16.66% decrease) ** Processing: figure/unnamed-chunk-7-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53035 bytes Input file size = 53185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 Output IDAT size = 45579 bytes (7456 bytes decrease) Output file size = 45657 bytes (7528 bytes = 14.15% decrease) ** Processing: figure/unnamed-chunk-8-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51673 bytes Input file size = 51823 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 Output IDAT size = 43346 bytes (8327 bytes decrease) Output file size = 43424 bytes (8399 bytes = 16.21% decrease) ** Processing: figure/unnamed-chunk-10-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115352 bytes Input file size = 115598 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98873 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98873 Output IDAT size = 98873 bytes (16479 bytes decrease) Output file size = 98951 bytes (16647 bytes = 14.40% decrease) ** Processing: figure/unnamed-chunk-11-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 173493 bytes Input file size = 173823 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958 Output IDAT size = 146958 bytes (26535 bytes decrease) Output file size = 147036 bytes (26787 bytes = 15.41% decrease) ** Processing: figure/unnamed-chunk-13-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 122190 bytes Input file size = 122436 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103770 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103770 Output IDAT size = 103770 bytes (18420 bytes decrease) Output file size = 103848 bytes (18588 bytes = 15.18% decrease) ** Processing: figure/unnamed-chunk-13-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 146263 bytes Input file size = 146545 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124620 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124620 Output IDAT size = 124620 bytes (21643 bytes decrease) Output file size = 124698 bytes (21847 bytes = 14.91% decrease) --- finished re-building ‘Basic_example.Rmd’ --- re-building ‘Comparing.Rmd’ using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building ‘Comparing.Rmd’ --- re-building ‘Outliers.Rmd’ using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-3-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 178081 bytes Input file size = 178411 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145703 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145703 Output IDAT size = 145703 bytes (32378 bytes decrease) Output file size = 145781 bytes (32630 bytes = 18.29% decrease) Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-4-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 156118 bytes Input file size = 156424 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133829 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133829 Output IDAT size = 133829 bytes (22289 bytes decrease) Output file size = 133907 bytes (22517 bytes = 14.39% decrease) ** Processing: figure/unnamed-chunk-4-2.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 133282 bytes Input file size = 133552 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119369 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119369 Output IDAT size = 119369 bytes (13913 bytes decrease) Output file size = 119447 bytes (14105 bytes = 10.56% decrease) ** Processing: figure/unnamed-chunk-4-3.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124751 bytes Input file size = 125009 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107183 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107183 Output IDAT size = 107183 bytes (17568 bytes decrease) Output file size = 107261 bytes (17748 bytes = 14.20% decrease) --- finished re-building ‘Outliers.Rmd’ SUMMARY: processing the following file failed: ‘Comparing.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Advanced.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59332 bytes Input file size = 59494 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49854 Output IDAT size = 49854 bytes (9478 bytes decrease) Output file size = 49932 bytes (9562 bytes = 16.07% decrease) ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 61007 bytes Input file size = 61169 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50921 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50921 Output IDAT size = 50921 bytes (10086 bytes decrease) Output file size = 50999 bytes (10170 bytes = 16.63% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79378 bytes Input file size = 79564 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69382 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69382 Output IDAT size = 69382 bytes (9996 bytes decrease) Output file size = 69460 bytes (10104 bytes = 12.70% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85902 bytes Input file size = 86100 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74308 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74308 Output IDAT size = 74308 bytes (11594 bytes decrease) Output file size = 74386 bytes (11714 bytes = 13.61% decrease) ** Processing: figure/unnamed-chunk-5-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82133 bytes Input file size = 82331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 Output IDAT size = 79526 bytes (2607 bytes decrease) Output file size = 79604 bytes (2727 bytes = 3.31% decrease) ** Processing: figure/unnamed-chunk-5-3.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54778 bytes Input file size = 54928 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48980 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48980 Output IDAT size = 48980 bytes (5798 bytes decrease) Output file size = 49058 bytes (5870 bytes = 10.69% decrease) ** Processing: figure/unnamed-chunk-5-4.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46664 bytes Input file size = 46802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 Output IDAT size = 44876 bytes (1788 bytes decrease) Output file size = 44954 bytes (1848 bytes = 3.95% decrease) --- finished re-building ‘Advanced.Rmd’ --- re-building ‘Basic_example.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55831 bytes Input file size = 55981 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46600 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46600 Output IDAT size = 46600 bytes (9231 bytes decrease) Output file size = 46678 bytes (9303 bytes = 16.62% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57771 bytes Input file size = 57933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48946 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48946 Output IDAT size = 48946 bytes (8825 bytes decrease) Output file size = 49024 bytes (8909 bytes = 15.38% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75565 bytes Input file size = 75751 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62170 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62170 Output IDAT size = 62170 bytes (13395 bytes decrease) Output file size = 62248 bytes (13503 bytes = 17.83% decrease) ** Processing: figure/unnamed-chunk-6-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76647 bytes Input file size = 76833 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63957 Output IDAT size = 63957 bytes (12690 bytes decrease) Output file size = 64035 bytes (12798 bytes = 16.66% decrease) ** Processing: figure/unnamed-chunk-7-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53035 bytes Input file size = 53185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 Output IDAT size = 45579 bytes (7456 bytes decrease) Output file size = 45657 bytes (7528 bytes = 14.15% decrease) ** Processing: figure/unnamed-chunk-8-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51673 bytes Input file size = 51823 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 Output IDAT size = 43346 bytes (8327 bytes decrease) Output file size = 43424 bytes (8399 bytes = 16.21% decrease) ** Processing: figure/unnamed-chunk-10-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115358 bytes Input file size = 115604 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98875 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98875 Output IDAT size = 98875 bytes (16483 bytes decrease) Output file size = 98953 bytes (16651 bytes = 14.40% decrease) ** Processing: figure/unnamed-chunk-11-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 173498 bytes Input file size = 173828 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146958 Output IDAT size = 146958 bytes (26540 bytes decrease) Output file size = 147036 bytes (26792 bytes = 15.41% decrease) ** Processing: figure/unnamed-chunk-13-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 122193 bytes Input file size = 122439 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103779 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103779 Output IDAT size = 103779 bytes (18414 bytes decrease) Output file size = 103857 bytes (18582 bytes = 15.18% decrease) ** Processing: figure/unnamed-chunk-13-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 146262 bytes Input file size = 146544 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124621 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124621 Output IDAT size = 124621 bytes (21641 bytes decrease) Output file size = 124699 bytes (21845 bytes = 14.91% decrease) --- finished re-building ‘Basic_example.Rmd’ --- re-building ‘Comparing.Rmd’ using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building ‘Comparing.Rmd’ --- re-building ‘Outliers.Rmd’ using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-3-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 178147 bytes Input file size = 178477 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145697 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145697 Output IDAT size = 145697 bytes (32450 bytes decrease) Output file size = 145775 bytes (32702 bytes = 18.32% decrease) Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-4-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 156234 bytes Input file size = 156540 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133884 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133884 Output IDAT size = 133884 bytes (22350 bytes decrease) Output file size = 133962 bytes (22578 bytes = 14.42% decrease) ** Processing: figure/unnamed-chunk-4-2.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 133088 bytes Input file size = 133358 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119290 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119290 Output IDAT size = 119290 bytes (13798 bytes decrease) Output file size = 119368 bytes (13990 bytes = 10.49% decrease) ** Processing: figure/unnamed-chunk-4-3.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124693 bytes Input file size = 124951 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107177 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107177 Output IDAT size = 107177 bytes (17516 bytes decrease) Output file size = 107255 bytes (17696 bytes = 14.16% decrease) --- finished re-building ‘Outliers.Rmd’ SUMMARY: processing the following file failed: ‘Comparing.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Advanced.Rmd' using knitr --- finished re-building 'Advanced.Rmd' --- re-building 'Basic_example.Rmd' using knitr --- finished re-building 'Basic_example.Rmd' --- re-building 'Comparing.Rmd' using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building 'Comparing.Rmd' --- re-building 'Outliers.Rmd' using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building 'Outliers.Rmd' SUMMARY: processing the following file failed: 'Comparing.Rmd' Error: Vignette re-building failed. Execution halted Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Advanced.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59322 bytes Input file size = 59484 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 Output IDAT size = 49853 bytes (9469 bytes decrease) Output file size = 49931 bytes (9553 bytes = 16.06% decrease) ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60998 bytes Input file size = 61160 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 Output IDAT size = 50915 bytes (10083 bytes decrease) Output file size = 50993 bytes (10167 bytes = 16.62% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79380 bytes Input file size = 79566 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 Output IDAT size = 69373 bytes (10007 bytes decrease) Output file size = 69451 bytes (10115 bytes = 12.71% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85905 bytes Input file size = 86103 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 Output IDAT size = 74310 bytes (11595 bytes decrease) Output file size = 74388 bytes (11715 bytes = 13.61% decrease) ** Processing: figure/unnamed-chunk-5-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82133 bytes Input file size = 82331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 Output IDAT size = 79526 bytes (2607 bytes decrease) Output file size = 79604 bytes (2727 bytes = 3.31% decrease) ** Processing: figure/unnamed-chunk-5-3.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54780 bytes Input file size = 54930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 Output IDAT size = 48985 bytes (5795 bytes decrease) Output file size = 49063 bytes (5867 bytes = 10.68% decrease) ** Processing: figure/unnamed-chunk-5-4.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46664 bytes Input file size = 46802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 Output IDAT size = 44876 bytes (1788 bytes decrease) Output file size = 44954 bytes (1848 bytes = 3.95% decrease) --- finished re-building ‘Advanced.Rmd’ --- re-building ‘Basic_example.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55825 bytes Input file size = 55975 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 Output IDAT size = 46598 bytes (9227 bytes decrease) Output file size = 46676 bytes (9299 bytes = 16.61% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57771 bytes Input file size = 57933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 Output IDAT size = 48944 bytes (8827 bytes decrease) Output file size = 49022 bytes (8911 bytes = 15.38% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75568 bytes Input file size = 75754 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 Output IDAT size = 62169 bytes (13399 bytes decrease) Output file size = 62247 bytes (13507 bytes = 17.83% decrease) ** Processing: figure/unnamed-chunk-6-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76646 bytes Input file size = 76832 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 Output IDAT size = 63958 bytes (12688 bytes decrease) Output file size = 64036 bytes (12796 bytes = 16.65% decrease) ** Processing: figure/unnamed-chunk-7-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53035 bytes Input file size = 53185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 Output IDAT size = 45579 bytes (7456 bytes decrease) Output file size = 45657 bytes (7528 bytes = 14.15% decrease) ** Processing: figure/unnamed-chunk-8-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51673 bytes Input file size = 51823 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 Output IDAT size = 43346 bytes (8327 bytes decrease) Output file size = 43424 bytes (8399 bytes = 16.21% decrease) ** Processing: figure/unnamed-chunk-10-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115354 bytes Input file size = 115600 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 Output IDAT size = 98863 bytes (16491 bytes decrease) Output file size = 98941 bytes (16659 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-11-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 173509 bytes Input file size = 173839 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 Output IDAT size = 146962 bytes (26547 bytes decrease) Output file size = 147040 bytes (26799 bytes = 15.42% decrease) ** Processing: figure/unnamed-chunk-13-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 122185 bytes Input file size = 122431 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 Output IDAT size = 103793 bytes (18392 bytes decrease) Output file size = 103871 bytes (18560 bytes = 15.16% decrease) ** Processing: figure/unnamed-chunk-13-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 146262 bytes Input file size = 146544 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 Output IDAT size = 124615 bytes (21647 bytes decrease) Output file size = 124693 bytes (21851 bytes = 14.91% decrease) --- finished re-building ‘Basic_example.Rmd’ --- re-building ‘Comparing.Rmd’ using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building ‘Comparing.Rmd’ --- re-building ‘Outliers.Rmd’ using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-3-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 178013 bytes Input file size = 178343 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145607 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145607 Output IDAT size = 145607 bytes (32406 bytes decrease) Output file size = 145685 bytes (32658 bytes = 18.31% decrease) Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-4-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 156042 bytes Input file size = 156348 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133745 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133745 Output IDAT size = 133745 bytes (22297 bytes decrease) Output file size = 133823 bytes (22525 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-4-2.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 133321 bytes Input file size = 133591 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119484 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119484 Output IDAT size = 119484 bytes (13837 bytes decrease) Output file size = 119562 bytes (14029 bytes = 10.50% decrease) ** Processing: figure/unnamed-chunk-4-3.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124696 bytes Input file size = 124954 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107182 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107182 Output IDAT size = 107182 bytes (17514 bytes decrease) Output file size = 107260 bytes (17694 bytes = 14.16% decrease) --- finished re-building ‘Outliers.Rmd’ SUMMARY: processing the following file failed: ‘Comparing.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Advanced.Rmd’ using knitr ** Processing: figure/unnamed-chunk-2-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 59322 bytes Input file size = 59484 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 49853 Output IDAT size = 49853 bytes (9469 bytes decrease) Output file size = 49931 bytes (9553 bytes = 16.06% decrease) ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 60998 bytes Input file size = 61160 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 50915 Output IDAT size = 50915 bytes (10083 bytes decrease) Output file size = 50993 bytes (10167 bytes = 16.62% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 79380 bytes Input file size = 79566 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 69373 Output IDAT size = 69373 bytes (10007 bytes decrease) Output file size = 69451 bytes (10115 bytes = 12.71% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 85905 bytes Input file size = 86103 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 74310 Output IDAT size = 74310 bytes (11595 bytes decrease) Output file size = 74388 bytes (11715 bytes = 13.61% decrease) ** Processing: figure/unnamed-chunk-5-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 82133 bytes Input file size = 82331 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79526 Output IDAT size = 79526 bytes (2607 bytes decrease) Output file size = 79604 bytes (2727 bytes = 3.31% decrease) ** Processing: figure/unnamed-chunk-5-3.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 54780 bytes Input file size = 54930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48985 Output IDAT size = 48985 bytes (5795 bytes decrease) Output file size = 49063 bytes (5867 bytes = 10.68% decrease) ** Processing: figure/unnamed-chunk-5-4.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46664 bytes Input file size = 46802 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44876 Output IDAT size = 44876 bytes (1788 bytes decrease) Output file size = 44954 bytes (1848 bytes = 3.95% decrease) --- finished re-building ‘Advanced.Rmd’ --- re-building ‘Basic_example.Rmd’ using knitr ** Processing: figure/unnamed-chunk-3-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55825 bytes Input file size = 55975 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46598 Output IDAT size = 46598 bytes (9227 bytes decrease) Output file size = 46676 bytes (9299 bytes = 16.61% decrease) ** Processing: figure/unnamed-chunk-4-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 57771 bytes Input file size = 57933 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 48944 Output IDAT size = 48944 bytes (8827 bytes decrease) Output file size = 49022 bytes (8911 bytes = 15.38% decrease) ** Processing: figure/unnamed-chunk-5-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 75568 bytes Input file size = 75754 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 62169 Output IDAT size = 62169 bytes (13399 bytes decrease) Output file size = 62247 bytes (13507 bytes = 17.83% decrease) ** Processing: figure/unnamed-chunk-6-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 76646 bytes Input file size = 76832 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 63958 Output IDAT size = 63958 bytes (12688 bytes decrease) Output file size = 64036 bytes (12796 bytes = 16.65% decrease) ** Processing: figure/unnamed-chunk-7-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53035 bytes Input file size = 53185 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45579 Output IDAT size = 45579 bytes (7456 bytes decrease) Output file size = 45657 bytes (7528 bytes = 14.15% decrease) ** Processing: figure/unnamed-chunk-8-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51673 bytes Input file size = 51823 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43346 Output IDAT size = 43346 bytes (8327 bytes decrease) Output file size = 43424 bytes (8399 bytes = 16.21% decrease) ** Processing: figure/unnamed-chunk-10-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 115354 bytes Input file size = 115600 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 98863 Output IDAT size = 98863 bytes (16491 bytes decrease) Output file size = 98941 bytes (16659 bytes = 14.41% decrease) ** Processing: figure/unnamed-chunk-11-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 173509 bytes Input file size = 173839 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 146962 Output IDAT size = 146962 bytes (26547 bytes decrease) Output file size = 147040 bytes (26799 bytes = 15.42% decrease) ** Processing: figure/unnamed-chunk-13-1.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 122185 bytes Input file size = 122431 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103793 Output IDAT size = 103793 bytes (18392 bytes decrease) Output file size = 103871 bytes (18560 bytes = 15.16% decrease) ** Processing: figure/unnamed-chunk-13-2.png 771x600 pixels, 3x8 bits/pixel, RGB Input IDAT size = 146262 bytes Input file size = 146544 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 124615 Output IDAT size = 124615 bytes (21647 bytes decrease) Output file size = 124693 bytes (21851 bytes = 14.91% decrease) --- finished re-building ‘Basic_example.Rmd’ --- re-building ‘Comparing.Rmd’ using knitr Quitting from lines 34-58 [unnamed-chunk-2] (Comparing.Rmd) Error: processing vignette 'Comparing.Rmd' failed with diagnostics: Bernoulli requires the response to be numeric in {0,1} --- failed re-building ‘Comparing.Rmd’ --- re-building ‘Outliers.Rmd’ using knitr Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-3-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 178152 bytes Input file size = 178482 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145714 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 145714 Output IDAT size = 145714 bytes (32438 bytes decrease) Output file size = 145792 bytes (32690 bytes = 18.32% decrease) Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 4 unlabeled data points (too many overlaps). Consider increasing max.overlaps ** Processing: figure/unnamed-chunk-4-1.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 156092 bytes Input file size = 156398 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133814 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 133814 Output IDAT size = 133814 bytes (22278 bytes decrease) Output file size = 133892 bytes (22506 bytes = 14.39% decrease) ** Processing: figure/unnamed-chunk-4-2.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 133212 bytes Input file size = 133482 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119364 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 119364 Output IDAT size = 119364 bytes (13848 bytes decrease) Output file size = 119442 bytes (14040 bytes = 10.52% decrease) ** Processing: figure/unnamed-chunk-4-3.png 900x700 pixels, 3x8 bits/pixel, RGB Input IDAT size = 124678 bytes Input file size = 124936 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107119 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 107119 Output IDAT size = 107119 bytes (17559 bytes decrease) Output file size = 107197 bytes (17739 bytes = 14.20% decrease) --- finished re-building ‘Outliers.Rmd’ SUMMARY: processing the following file failed: ‘Comparing.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64