DMRMark: DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data

Perform differential analysis for methylation array data. Detect differentially methylated regions (DMRs) from array M-values. The core is a Non-homogeneous Hidden Markov Model for estimating spatial correlation and a novel Constrained Gaussian Mixture Model for modeling the M-value pairs of each individual locus.

Version: 1.1.1
Depends: MCMCpack, mvtnorm, ellipse
Published: 2017-04-21
Author: Linghao SHEN
Maintainer: Linghao SHEN <sl013 at ie.cuhk.edu.hk>
License: GPL-2 | GPL-3 [expanded from: GPL]
NeedsCompilation: no
CRAN checks: DMRMark results

Documentation:

Reference manual: DMRMark.pdf

Downloads:

Package source: DMRMark_1.1.1.tar.gz
Windows binaries: r-devel: DMRMark_1.1.1.zip, r-release: DMRMark_1.1.1.zip, r-oldrel: DMRMark_1.1.1.zip
macOS binaries: r-release (arm64): DMRMark_1.1.1.tgz, r-release (x86_64): DMRMark_1.1.1.tgz, r-oldrel: DMRMark_1.1.1.tgz
Old sources: DMRMark archive

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