GeneScape: Simulation of Single Cell RNA-Seq Data with Complex Structure

Simulating single cell RNA-seq data with complicated structure. This package is developed based on the Splat method (Zappia, Phipson and Oshlack (2017) <doi:10.1186/s13059-017-1305-0>). 'GeneScape' incorporates additional features to simulate single cell RNA-seq data with complicated differential expression and correlation structures, such as sub-cell-types, correlated genes (pathway genes) and hub genes.

Version: 1.0
Imports: MASS (≥ 7.3-53.1), corpcor (≥ 1.6.10), stats
Published: 2023-06-13
Author: Qi Gao [aut, cre]
Maintainer: Qi Gao <qi.gao at duke.edu>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: GeneScape results

Documentation:

Reference manual: GeneScape.pdf

Downloads:

Package source: GeneScape_1.0.tar.gz
Windows binaries: r-prerel: GeneScape_1.0.zip, r-release: GeneScape_1.0.zip, r-oldrel: GeneScape_1.0.zip
macOS binaries: r-prerel (arm64): GeneScape_1.0.tgz, r-release (arm64): GeneScape_1.0.tgz, r-oldrel (arm64): GeneScape_1.0.tgz, r-prerel (x86_64): GeneScape_1.0.tgz, r-release (x86_64): GeneScape_1.0.tgz

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