2005-02-16 Rene Locher IDPmisc V0.2.3 2005-03-22 Rene Locher IDPmisc V0.3.1 * inf.omit, ok added 2005-04-20 Rene Locher IDPmisc V0.3.2 * inf.omit deprecated * inf.omit renamed to the more precise name NaRV.omit. NaRV = Not A Regular Value * ipairs, iplot, image: densities are now displayed centered over the corresponding factor levels 2005-04-21 Rene Locher IDPmisc V0.3.3 * ipairs: factor levels are now correctely labeled * Image, ipairs, ilagplot: argument 'ztrans' renamed to ztransf 2005-04-27 Rene Locher IDPmisc V0.3.4 * iplot: factor levels are now correctely labeled 2005-06-03 Rene Locher IDPmisc V0.3.5 * zoom: example in help and text output of zoom are improved 2005-07-22 Rene Locher IDPmisc V0.3.6 * zoom: example in help further improved * ixyplot: limits for nonfactors minimized 2005-10-05 Rene Locher IDPmisc V0.4.1 not published 2005-10-05 Rene Locher IDPmisc V0.4.2 * ipairs, ilagplot: additional examples on dataset AirQual{SwissAir} * Image, ipairs, ilagplot, ixyplot: additional argument 'ztransf', which allows transformation of counts by a user defined function. 2005-11-15 Rene Locher Quick fix for CRAN because version 0.5 is not yet ready to be published * Arrows: 'atan(y,x)' replaced by 'atan2(y,x)' 2005-10-12 Rene Locher IDPmisc V0.5.0, not published * draw.leg: new function * rose-class: new class * rose: new function * plot: new S4-Method for class rose * RhoPhi2xy: new function * xy2RhoPhi: new function 2005-10-12 Rene Locher IDPmisc V0.5.1, not published * plot: S4-Method, argument 'del.vp' removed 2005-10-17 Rene Locher IDPmisc V0.5.2, not published * plot: S4-Method, help to argument 'stacked' and corresponding error message in code updated. Interpretation of argument 'rev.col' changed, so that stacked and unstacked roses have now the same order in the legend. * rose: new argument 'right' 'na.warning=TRUE': warns now also for x values out of breaks range 2005-10-18 Rene Locher IDPmisc V0.5.3, not published * plot: S4-Method Several new warnings added. Argument 'trans' added, help revised * rose: argument 'na.warning' changed to 'warn' 2005-10-18 Rene Locher IDPmisc V0.5.4, not published several improvements on help pages * RhoPhi2xy changed to 'clock2cart' * xy2RhoPhi changed to 'cart2clock' * plot.rose completely revised, including argument list and help pages 2005-12-06 Rene Locher IDPmisc V0.5.5 * plot.rose: several bugs fixed 2005-12-16 Rene Locher IDPmisc V0.5.6 * plot.rose works now correctly with ray.lim set manually in grid.control * general.control: arguments reordered and new arguments for manual setting of rose dimensions. Help expanded and corrected. * grid.control: default values for argument 'cyclVar.lab' corrected. 'SW' replaced by 'SE' 2005-12-19 Rene Locher IDPmisc V0.5.7 * general.control: Help expanded * IDPmisc.package: Help expanded 2005-12-22 Rene Locher IDPmisc V0.5.8 * plot.rose: Bug for roses with negative values in slot rho eliminated 2006-01-19 Rene Locher IDPmisc V0.5.9 * general.control for plot.rose with new argument 'shift' 2006-06-20 Rene Locher IDPmisc V0.6.0, not published * clock2cart, cart2clock: processing of arguments changed to make input more flexible * Arrows default settings of arguments 'h.lwd' and 'h.lty' changed * getXY: new function to read in data with 1 or 2 dimension * peaks: new function to evaluate peaks in data without smoothing them first * MS: New dataset included: SELDI TOF MS of sheep blood 2006-07-03 Rene Locher IDPmisc V0.6.1 * getXY, peaks, MS: Improvement of help, change of some argument names for better understanding 2006-07-12 Rene Locher IDPmisc V0.6.2 * peaks: Improvement of help 2006-07-14 Rene Locher IDPmisc V0.7.0, not published * longts.plot New function for plotting very long time series 2006-07-24 Rene Locher IDPmisc V0.7.1 * longts.plot Help improved, some names of arguments changed 2006-07-25 Rene Locher IDPmisc V0.7.2 * longts.plot Default of arguments 'y1lim' and 'y2lim' changed to 'range(y1,na.rm=T,finite=TRUE)'. 2006-07-25 Rene Locher IDPmisc V0.7.3 * draw.leg code adapted to new grid version 2006-07-26 Rene Locher IDPmisc V0.7.4 * longts.plot Argument names changed changed back to old version in V0.7.2 because these are more consistent to arguments in par(). Sorry for this inconvenience! Bug for color in axis removed. 2006-07-27 Rene Locher IDPmisc V0.7.5 * peaks In rare cases peak width was undefined. 2006-11-08 Rene Locher IDPmisc V0.8.0 * rfbaseline New function for baseline subtraction * rfbaselineScale New function 2007-02-07 Rene Locher IDPmisc V0.9.0, not published * itermplot New function for termplots with very large numbers of observations * ipanel.smooth New panelfunction for itermplot * help Typing errors corrected 2007-02-19 Rene Locher IDPmisc V0.9.1 * longts.plot New arguments 'cex.axis', 'mar', 'filename', 'extension', 'filetype'. Spacing between individual figures has been optimized. Automatic constructed and manually defined titles are now positioned identically. Default value of 'mgp' changed from c(1.7,0.7,0) to c(2,0.7,0) * rose-class Help updated, so that it is found now in the subject index by rose-class 2007-02-19 Rene Locher IDPmisc V0.9.2 * IDPcolorRamp Makes now sure that argument 'n' is an integer so that no warning is issued any more. * Image Makes now sure that the returned maximum counts is an integer for any function in argument 'ztransf'. * Arrows When some elements of (x1,y1,x2,y2) result in an undefined direction, an warning is issued and the corresponding arrow is not drawn. * draw.leg updated to new version of grid graphics 2007-08-14 Rene Locher IDPmisc V0.9.3 * iterm New argument 'scale'. 2007-10-02 Rene Locher IDPmisc V0.9.4 * DESCRPTION: 'SaveImage: TRUE' removed, Authors E-mail address changed License standardized * RD-Files: non-ASCII values from help pages removed. * plot.rose new argument 'warn' added * title.control default for argument 'cex' 1.5 (before 1.7) * longts.plot default for argument 'cex.leg' par("cex") (before 1.5) . example adapted to SwissAir(>= 1.08) 2007-10-03 Rene Locher IDPmisc V0.9.5 * DESCRIPTION: 'Encoding: latin1' added 2008-07-08 Rene Locher IDPmisc V0.9.6 * plot.longts replaces function 'longts.plot' with new argument 'xpd' to define whether data points are clipped to plot region (=FALSE) or not (=TRUE). Horizontal lines will be always clipped. Arguments 'automain' and 'main' can now be combined. New defaults for 'upf', 'fpp', 'overlap', 'col.y2', 'lwd2', 'mar'. New arguments for defining labeling and tick marking axes. Beware: Definition of x-axis has completely changed and is now closer to standard approach. Restores parameters of par() which were in use before call of function. * longts.plot deprecated * ixyplot deprecated and replaced by iplot. Reason: ixyplot() produces classical graphics contrary to xyplot(). * showColors Restores parameters of par() which were in use before call function. * poster.plot Restores parameters of par() which were in use before call function. * Image: New argument 'matrix'. Zmax is not rounded any more. 2008-07-08 Rene Locher IDPmisc V0.9.7 * longts.plot: examples in help removed * ixyplot: examples in help removed * Image: example with ixyplot replaced by iplot 2008-07-08 Rene Locher IDPmisc V0.9.8 * longtsPlot: Restores parameters of par() which were in use before call function. 2008-07-21 Rene Locher IDPmisc V0.9.9 Typos in help removed 2009-03-13 Rene Locher IDPmisc V1.0.00 * inf.omit: removed. Was replaced by NaRV.omit() . * longts.plot: help reduced and function defuncted. Use longtsPlot instead. * rd-files: Adaption to new rules for R 2.9.x, examples added and \ or improved. * ixyplot: Help reduced and function defuncted. Use iplot() instead. * IDPcolorRamp: Help extended. * Image: matrix=TRUE delivered 'zmax' instead of matrix. This resulted also in wrong behaviour for ilagplot() and ipairs() for zmax=fixed value. Comments on package 'fields' removed. * ilagplot: Argument 'zmax' did not work correctly. Position of title optimized. New arguments 'cex.axis', 'd.main', 'legend', 'd.legend', 'mar', 'oma'. Defaults for cex.main changed. Help slightly improved. * ipairs: Argument 'zmax' did not work correctly. Axes were not clipped to the plot region. Arguments 'labels', 'cex.lab', 'nlab', 'minL.lab' are now called 'lab.diag', 'cex.lag', 'nlab.axis', 'minL.axis'. New arguments 'cex.axis', 'd.main', 'legend', 'd.legend', 'mar', 'oma'. Defaults for cex.diag and cex.main changed. Argument 'verbose' removed. Compacter figure. By default no margins around individual scatter plots. Examples in help slightly improved. * iplotLegend: New function to plot legends of color ramp. * iplot: Plotting Legend first, to allow further additions to plot. 'nx.lab', 'ny.lab', 'minL.lab' renamed to 'nlab.xaxis', 'nlab.yaxis', 'minL.axis'. New arguments 'd.main', 'legend', 'd.legend', 'cex.axis', 'las', 'oma', '...' * longtsPlot: Axes have sometimes not been clipped to the plot region. Help improved. * MS: Help improved. * peak: Help improved. * poster.plot: Help improved. * showColors: New argument 'mar'. After exiting showColors, original arguments of par() are restored. 2009-03-16 Rene Locher IDPmisc V1.0.01 * plot.rose Shows warning only when warn = TRUE * Help: Typos corrected, text improved. 2009-03-26 Rene Locher IDPmisc V1.1.00 * plotdat devided into plotdat and griddat * plot.rose: New feature: Rose can now be plotted in segments (which is now default). Help slightly changed. * general.control: New argument 'type'. Cf. 'plot.rose'. * draw.leg: if (any(textLocations)) replaced by if (length(textLocations)) * ilagplot: Default distances and character sizes optimized. New arguments 'cex','mgp','tcl'. * ipairs: Default distances and character sizes optimized. New arguments 'cex','mgp','tcl'. * iplot: Default distances and character sizes optimized. New arguments 'cex','mgp','tcl'. 2009-08-03 Rene Locher IDPmisc V1.1.01 * non-english letters removed from sources and help files for compatibility * Description: Encoding: latin1 removed * Partially matching arguments altered to fully matching arguments 2009-08-03 Rene Locher IDPmisc V1.1.02 * Error in help file corrected * Partially matching arguments altered to fully matching arguments 2009-08-04 Rene Locher IDPmisc V1.1.03 * File drawleg.R, which was needless, removed. * Partially matching arguments altered to fully matching arguments 2009-10-05 Rene Locher IDPmisc V1.1.04 * date of changes corrected since V1.0.00 * longts.plot.rd removed * longtsPlot: A change made in V0.9.6 was revoked. Parameters of par() before call of function are no longer stored. Reason: Easier plotting of individual legend in the last figure of the page. * rose.grob: gpar(fill="transparent") set in all grobs. This was necessary for plotting correctly on png devices!? 2009-10-06 Rene Locher IDPmisc V1.1.05 * longtsPlot: When filename is defined longtsPlot() does not ask any more wether it should continue to print the next page. Wrong link corrected in longtsPlot.Rd 2009-10-27 Rene Locher IDPmisc V1.1.06 * IDPcolorRamp.Rd: No longer available link removed. * Image.Rd: No longer available link removed. * showColors.Rd: No longer available link removed. 2010-10-15 Rene Locher IDPmisc V1.1.07 * peaks.RD: link to outdated ppc-package removed * plot.rose: rose can be plotted as stacked also when cut argument is null. Default colors for unstacked optimized. * rose.grob: Width of border can be chosen for stacked plots. 2010-10-15 Rene Locher IDPmisc V1.1.08 * rose: When warn = FALSE, observations with cyclVar==NA were not eliminated. 2010-12-02 Rene Locher IDPmisc V1.1.09 * useDynLib(IDPmisc) in NAMESPACE outcommented as it is not used * ixyplot removed as defuncted since V1.0.00 * longts.plot removed as defuncted since V1.0.00 2010-12-02 Rene Locher IDPmisc V1.1.10 Unnecessary file removed in src directory. 2011-09-21 Rene Locher IDPmisc V1.1.11 * showColors: help improved. * longtsPlot: on.exit(options(warn=options("warn"), add=TRUE), was on.exit(warn=0, add=TRUE). Argument 'type' removed. New arguments 'type1', 'type2', 'pch1', 'pch2', 'cex1', 'cex2'. Help text modified. * plot.page.R New arguments 'type1', 'type2', 'pch1', 'pch2', 'cex1', 'cex2'. 2011-09-28 Rene Locher IDPmisc V1.1.12 * longtsPlot: Arguments 'cex1', 'cex2' renamed to 'pt.cex1', 'pt.cex2' Data.frame for y2 did not work. * plot.page: Arguments 'cex1', 'cex2' renamed to 'pt.cex1', 'pt.cex2' 'pt.cex1' and 'pt.cex2' now only used for size of symbols! Legend plot adapted to different 'pt.cex1' and 'pt.cex2' Lines arguments corrected. 2011-10-09 Rene Locher IDPmisc V1.1.13 * longtsPlot: Arguments 'pt.cex1', 'pt.cex2' renamed to 'cex.pt1', 'cex.pt2' for consistency reasons. New argument 'las'. * plot.page Arguments 'pt.cex1', 'pt.cex2' renamed to 'cex.pt1', 'cex.pt2' for consistency reasons. New argument 'las'. Unused argument 'y2.lab' removed. Minor corrections when drawing axes. 2011-10-10 Rene Locher IDPmisc V1.1.14 * longtsPlot: Default of argument 'las' set to 0. 2011-11-08 Rene Locher IDPmisc V1.1.15 * cart2clock, clock2cart: details section added. * cart2clock: comment in examples improved. Error when argument y=0 corrected. 2011-11-09 Rene Locher IDPmisc V1.1.16 * MS: size of data reduced to about half by better compression 2012-11-01 Rene Locher IDPmisc V1.1.17 * plotdat: Partial argument match removed 2018-10-02 Rene Locher IDPmisc V1.1.18 * Package: Datasets in help examples downsized to reduce execution time for testing package. Functions are now imported individually in namespace. New link to our institute. C function are now registered and dynamic symbols are used. * lwreg: S.h replaced by R.h and code adapted correspondingly. * iplot: Resetting par to previous settings. * rfbaseline: .C calls adapted to registered C function 2019-02-11 Rene Locher IDPmisc V1.1.19 * New functions for converting humidity measures added 2020-01-21 Rene Locher IDPmisc V1.1.2o * showColors: Link to DAAG package removed