Build Status Coverage Status CRAN Status

RClone v1.0.3

RClone is a R package version of GenClone program: to analyse data (SSR, SNP, …), test for clonality and describe spatial clonal organisation.

RClone allows:

  1. Description of data set
  2. Determination of MLL (MultiLocus Lineages)
  3. Genotypic diversity and evenness indices calculation
  4. Spatial organisation of MLG/MLL

Some of these analysis can be applied to dataset without clones.

Installation

Get the lastest development version from github:

#install.packages("devtools")
devtools::install_github("dbailleul/RClone")
library(RClone)

or the released version from CRAN:

install.packages("RClone")

And then, generate manuals:

vignette("RClone_quickmanual") #analysing one population
vignette("RClone_qmsevpops") #analysing several populations