demic: Dynamic Estimator of Microbial Communities

Multi-sample algorithm based on contigs and coverage values, to infer the relative distances of contigs from the replication origin and to accurately compare bacterial growth rates between samples. Yuan Gao and Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.

Version: 2.0.0
Depends: R (≥ 2.10)
Imports: lme4, Matrix (≥ 1.6-2), reshape2
Suggests: covr, lintr, testthat (≥ 3.0.0)
Published: 2024-01-22
DOI: 10.32614/CRAN.package.demic
Author: Yuan Gao [aut, cph], Charlie Bushman [cre]
Maintainer: Charlie Bushman <ctbushman at>
License: GPL (≥ 3)
NeedsCompilation: no
Materials: README NEWS
CRAN checks: demic results


Reference manual: demic.pdf


Package source: demic_2.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): demic_2.0.0.tgz, r-oldrel (arm64): demic_2.0.0.tgz, r-release (x86_64): demic_2.0.0.tgz, r-oldrel (x86_64): demic_2.0.0.tgz
Old sources: demic archive


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