dynwrap: Representing and Inferring Single-Cell Trajectories

Provides functionality to infer trajectories from single-cell data, represent them into a common format, and adapt them. Other biological information can also be added, such as cellular grouping, RNA velocity and annotation. Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.

Version: 1.2.4
Depends: R (≥ 3.0.0)
Imports: assertthat, babelwhale, crayon, dplyr, dynutils (≥ 1.0.3), dynparam, igraph, glue, magrittr, Matrix, methods, purrr, processx, readr, stringr, reshape2, tibble, tidyr, yaml
Suggests: covr, dyndimred, hdf5r, knitr, pkgload, ranger, rmarkdown, testthat
Published: 2023-07-19
DOI: 10.32614/CRAN.package.dynwrap
Author: Robrecht Cannoodt ORCID iD [aut, cre] (rcannood), Wouter Saelens ORCID iD [aut] (zouter)
Maintainer: Robrecht Cannoodt <rcannood at gmail.com>
BugReports: https://github.com/dynverse/dynwrap/issues
License: MIT + file LICENSE
URL: https://github.com/dynverse/dynwrap
NeedsCompilation: no
Citation: dynwrap citation info
Materials: README NEWS
In views: Omics
CRAN checks: dynwrap results


Reference manual: dynwrap.pdf
Vignettes: Creating a TI method: Container
Creating a TI method: Script
Creating a TI method: R
Creating a TI method: Wrapping trajectories


Package source: dynwrap_1.2.4.tar.gz
Windows binaries: r-devel: dynwrap_1.2.4.zip, r-release: dynwrap_1.2.4.zip, r-oldrel: dynwrap_1.2.4.zip
macOS binaries: r-release (arm64): dynwrap_1.2.4.tgz, r-oldrel (arm64): dynwrap_1.2.4.tgz, r-release (x86_64): dynwrap_1.2.4.tgz, r-oldrel (x86_64): dynwrap_1.2.4.tgz
Old sources: dynwrap archive

Reverse dependencies:

Reverse imports: SCORPIUS
Reverse suggests: dyngen


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