v0.7.0 - Added deprecation note warnings to the main functions. v0.6.8 - Added deprecation note to the DESCRIPTION. v0.6.7 - Fixed matrix dimensions in gprofiler if evcodes = T v0.6.6 - Change BugReports link to http://biit.cs.ut.ee/gprofiler/contact.cgi v0.6.5 - Reverted the default URL to http://biit.cs.ut.ee/gprofiler/ as too many users had access problems via https. v0.6.4 - Added BugReports field to the DESCRIPTION. v0.6.3 - Exposed an interface to set particular SSL version for RCurl, added the (get|set)_tls_version() functions. - Set default SSL version for RCurl to TLSv1_2. - Added the sort_by_structure parameter to gprofiler(), for specifying an order of returned results. v0.6.2 - Fixed the base URL: migrated to HTTPS. - Fixed swapped column headers for precision and recall. v0.6.1 - Fixed imports and undefined globals for CRAN, no changes for end users. v0.6 - Added the underrep, evcodes, min_set_size and min_isect_size parameters to gprofiler(). - Removed the no_isects parameter to gprofiler(), as this is no longer needed due to backend optimization. v0.5.3 - Added the src_filter parameter to gprofiler(), for specifying a subset of data sources. v0.5.2 - Added the include_graph parameter to gprofiler(), for requesting inclusion of network results. v0.5.1 - Added the no_isects parameter to gprofiler(), speeding up large queries. v0.5 - Improved API consistency - the parameters filter_na and mthreshold are now available in both gorth() and gconvert(); the result structures of said functions have changed to correspond more closely to the web service output. - mthreshold now defaults to infinity, i.e. all results are returned by default. - Added the (get|set)_base_url() functions. v0.4 - Added the (get|set)_user_agent() functions. - Bugfix: region queries now work properly in gprofiler() and gconvert(). v0.3 - Added PNG output to gprofiler(). v0.2 - Better interface to g:Profiler tools, support for most parameters available in the web interface. - Submission to CRAN. v0.0.1 - Initial release