indelmiss v1.0-10 (Release date: 2023-09-13) ============== Changes: * Updating of maintainer email address. indelmiss v1.0-9 (Release date: 2019-03-22) ============== Changes: * Maintainance. indelmiss v1.0-8 (Release date: 2018-01-30) ============== Changes: * Maintainance. * Updated citation. indelmiss v1.0-7 (Release date: 2016-08-21) ============== Changes: * nmiss changed to pmiss. pmiss is the proportion of missingness to be simulated. * Some fine tuning to examples in the indelrates.Rd file. indelmiss v1.0-6 (Release date: 2016-01-19) ============== Changes: * Allows for user-specified root probabilities. * Allows for user-specification of starting values for the rates. indelmiss v1.0-5 (Release date: 2015-11-25) ============== Changes: * Optimizations to code. Runs faster now. indelmiss v1.0-4 (Release date: 2015-11-17) ============== Changes: * Match tips from usertree to data from userphyl for datasource=="user". * Specifying toi with taxa names. * BIC typo corrected. * Added a minimal check for bg "listofnodes" argument, which will stop and warn users if any branch is not being listed in the branch grouping. * Quashed a bug that would pop up when building unique phyletic patterns (used within the algorithm) observed when discrete characters in the phyletic patterns included numbers greater than 9. * Quashed a bug that popped up when fitting a model with a single branch having a unique rate separate from the surrounding branches. * Both matrices and dataframes are now accepted for the discrete character data argument. * Argument matching for some arguments. * More tests for arguments in model specification.