## ----setup, include = FALSE--------------------------------------------------- knitr::opts_chunk$set(collapse = TRUE, comment = "#>") ## ----libraries, warning=FALSE------------------------------------------------- # devtools::install_github("NCEAS/metajam") library(metajam) library(readr) library(purrr) ## ----constants---------------------------------------------------------------- # Directory to save the data set path_folder <- "./Soil_bulk" # URL to read the search results stored as a csv on Google Drive csv_search_results_url <- "https://drive.google.com/uc?export=download&id=1WTLP2BcXCXmUyv4kmntyhuPfrBNdPIqV" ## ----download, eval=FALSE----------------------------------------------------- # # Create the local directory to store data sets # dir.create(path_folder, showWarnings = FALSE) # # # Read the data listing from Google Drive: https://drive.google.com/open?id=1WTLP2BcXCXmUyv4kmntyhuPfrBNdPIqV # data_listing <- read_csv(csv_search_results_url) # # # ### Download the data and metadata ---- # # # Create the list of unique dois # dois <- unique(data_listing$identifier) # # # batch download the datasets # data_folders <- map(dois, ~download_d1_data_pkg(.x, path_folder))