pctax: Professional Comprehensive Omics Data Analysis

Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and professional omics data analysis.

Version: 0.1.1
Depends: R (≥ 4.1.0)
Imports: pcutils (≥ 0.2.5), dplyr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, ggnewscale, ade4, scales
Suggests: picante, ggpmisc, NST, permute, aplot, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, jsonlite, prettydoc, clipr, zetadiv, ggforce, readxl
Published: 2024-04-10
Author: Chen Peng ORCID iD [aut, cre]
Maintainer: Chen Peng <pengchen2001 at zju.edu.cn>
BugReports: https://github.com/Asa12138/pctax/issues
License: GPL-3
URL: https://github.com/Asa12138/pctax
NeedsCompilation: no
Citation: pctax citation info
Materials: README NEWS
CRAN checks: pctax results

Documentation:

Reference manual: pctax.pdf
Vignettes: pctax

Downloads:

Package source: pctax_0.1.1.tar.gz
Windows binaries: r-prerel: pctax_0.1.1.zip, r-release: pctax_0.1.1.zip, r-oldrel: pctax_0.1.1.zip
macOS binaries: r-prerel (arm64): pctax_0.1.1.tgz, r-release (arm64): pctax_0.1.1.tgz, r-oldrel (arm64): pctax_0.1.1.tgz, r-prerel (x86_64): pctax_0.1.1.tgz, r-release (x86_64): pctax_0.1.1.tgz
Old sources: pctax archive

Linking:

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