Contains tools for supervised analyses of incomplete, overlapping multiomics datasets. Applies partial least squares in multiple steps to find models that predict survival outcomes. See Yamaguchi et al. (2023) <doi:10.1101/2023.03.10.532096>.
| Version: | 1.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | methods, stats, graphics, survival, pls, plsRcox, Polychrome (≥ 1.5.0), viridisLite, beanplot, oompaBase |
| Suggests: | R.rsp, tidyr, ClassDiscovery |
| Published: | 2023-03-13 |
| Author: | Kevin R. Coombes [cre, aut], Kyoko Yamaguchi [aut], Salma Abdelbaky [aut] |
| Maintainer: | Kevin R. Coombes <krc at silicovore.com> |
| License: | Apache License (== 2.0) |
| URL: | http://oompa.r-forge.r-project.org/ |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | plasma results |
| Reference manual: | plasma.pdf |
| Vignettes: |
plasma: Interpretation plasma: Partial LeAst Squares for Multiomics Analysis |
| Package source: | plasma_1.0.0.tar.gz |
| Windows binaries: | r-prerel: plasma_1.0.0.zip, r-release: plasma_1.0.0.zip, r-oldrel: plasma_1.0.0.zip |
| macOS binaries: | r-prerel (arm64): plasma_1.0.0.tgz, r-release (arm64): plasma_1.0.0.tgz, r-oldrel (arm64): plasma_1.0.0.tgz, r-prerel (x86_64): plasma_1.0.0.tgz, r-release (x86_64): plasma_1.0.0.tgz |
| Old sources: | plasma archive |
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