sequenza: Copy Number Estimation from Tumor Genome Sequencing Data

Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.

Version: 3.0.0
Depends: R (≥ 3.2.0)
Imports: pbapply, squash, iotools, readr, seqminer, copynumber
Suggests: testthat, knitr, rmarkdown, rmdformats
Published: 2019-05-09
Author: Francesco Favero ORCID iD [aut, cre], Andrea Marion Marquard ORCID iD [rev], Tejal Joshi ORCID iD [rev], Aron Charles Eklund ORCID iD [aut, ths]
Maintainer: Francesco Favero <favero.francesco at>
License: GPL-3
URL:, Mailing list:!forum/sequenza-user-group
NeedsCompilation: no
SystemRequirements: pandoc (>= 1.12.3)
Citation: sequenza citation info
Materials: NEWS
CRAN checks: sequenza results


Reference manual: sequenza.pdf
Vignettes: Sequenza User Guide


Package source: sequenza_3.0.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): sequenza_3.0.0.tgz, r-oldrel (x86_64): sequenza_3.0.0.tgz
Old sources: sequenza archive


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