st: Shrinkage t Statistic and Correlation-Adjusted t-Score

Implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) <doi:10.2202/1544-6115.1252> and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009) <doi:10.1093/bioinformatics/btp460>. It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.

Version: 1.2.7
Depends: R (≥ 3.0.2), sda (≥ 1.3.8), fdrtool (≥ 1.2.17), corpcor (≥ 1.6.10)
Imports: graphics, stats
Suggests: limma, samr
Published: 2021-11-27
Author: Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab at gmail.com>
License: GPL (≥ 3)
URL: https://strimmerlab.github.io/software/st/
NeedsCompilation: no
Materials: NEWS
CRAN checks: st results

Documentation:

Reference manual: st.pdf

Downloads:

Package source: st_1.2.7.tar.gz
Windows binaries: r-devel: st_1.2.6.zip, r-release: st_1.2.7.zip, r-oldrel: st_1.2.7.zip
macOS binaries: r-release (arm64): st_1.2.7.tgz, r-release (x86_64): st_1.2.7.tgz, r-oldrel: st_1.2.7.tgz
Old sources: st archive

Reverse dependencies:

Reverse depends: BioMark, MAclinical
Reverse suggests: CMA

Linking:

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