ensembleTax: Ensemble Taxonomic Assignments of Amplicon Sequencing Data

Creates ensemble taxonomic assignments of amplicon sequencing data in R using outputs of multiple taxonomic assignment algorithms and/or reference databases. Includes flexible algorithms for mapping taxonomic nomenclatures onto one another and for computing ensemble taxonomic assignments.

Version: 1.1.1
Depends: R (≥ 2.10)
Imports: dplyr, Biostrings, DECIPHER, stringr, ggplot2, reshape2, usethis
Suggests: knitr, rmarkdown, markdown
Published: 2021-05-21
DOI: 10.32614/CRAN.package.ensembleTax
Author: Dylan Catlett [aut, cre], Kevin Son [ctb], Connie Liang [ctb]
Maintainer: Dylan Catlett <dcat4444 at gmail.com>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: ensembleTax results


Reference manual: ensembleTax.pdf
Vignettes: assign.ensembleTax tutorial
ensembleTax package vignette
taxmapper tutorial


Package source: ensembleTax_1.1.1.tar.gz
Windows binaries: r-devel: ensembleTax_1.1.1.zip, r-release: ensembleTax_1.1.1.zip, r-oldrel: ensembleTax_1.1.1.zip
macOS binaries: r-release (arm64): ensembleTax_1.1.1.tgz, r-oldrel (arm64): ensembleTax_1.1.1.tgz, r-release (x86_64): ensembleTax_1.1.1.tgz, r-oldrel (x86_64): ensembleTax_1.1.1.tgz
Old sources: ensembleTax archive


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